Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC27.19■■□□□ 1.94
MSH6P52701 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC27.18■■□□□ 1.94
MSH6P52701 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC27.18■■□□□ 1.94
MSH6P52701 KRT16P6-202ENST00000425692 1426 ntBASIC27.18■■□□□ 1.94
MSH6P52701 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC27.18■■□□□ 1.94
MSH6P52701 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC27.18■■□□□ 1.94
MSH6P52701 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC27.18■■□□□ 1.94
MSH6P52701 PHB2-202ENST00000440277 996 ntTSL 5 BASIC27.18■■□□□ 1.94
MSH6P52701 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC27.18■■□□□ 1.94
MSH6P52701 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC27.18■■□□□ 1.94
MSH6P52701 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC27.18■■□□□ 1.94
MSH6P52701 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC27.17■■□□□ 1.94
MSH6P52701 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC27.17■■□□□ 1.94
MSH6P52701 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC27.17■■□□□ 1.94
MSH6P52701 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC27.17■■□□□ 1.94
MSH6P52701 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC27.17■■□□□ 1.94
MSH6P52701 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC27.17■■□□□ 1.94
MSH6P52701 AL645929.1-201ENST00000420084 975 ntBASIC27.17■■□□□ 1.94
MSH6P52701 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC27.17■■□□□ 1.94
MSH6P52701 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC27.17■■□□□ 1.94
MSH6P52701 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC27.17■■□□□ 1.94
MSH6P52701 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC27.17■■□□□ 1.94
MSH6P52701 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC27.17■■□□□ 1.94
MSH6P52701 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC27.16■■□□□ 1.94
MSH6P52701 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC27.16■■□□□ 1.94
MSH6P52701 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC27.16■■□□□ 1.94
MSH6P52701 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC27.16■■□□□ 1.94
MSH6P52701 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC27.16■■□□□ 1.94
MSH6P52701 AC009078.2-202ENST00000463353 338 ntBASIC27.16■■□□□ 1.94
MSH6P52701 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC27.16■■□□□ 1.94
MSH6P52701 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC27.16■■□□□ 1.94
MSH6P52701 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC27.16■■□□□ 1.94
MSH6P52701 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC27.16■■□□□ 1.94
MSH6P52701 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC27.16■■□□□ 1.94
MSH6P52701 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC27.15■■□□□ 1.94
MSH6P52701 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC27.15■■□□□ 1.94
MSH6P52701 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC27.15■■□□□ 1.94
MSH6P52701 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC27.15■■□□□ 1.94
MSH6P52701 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC27.15■■□□□ 1.94
MSH6P52701 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC27.15■■□□□ 1.94
MSH6P52701 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC27.15■■□□□ 1.94
MSH6P52701 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC27.15■■□□□ 1.94
MSH6P52701 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC27.15■■□□□ 1.94
MSH6P52701 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC27.15■■□□□ 1.94
MSH6P52701 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC27.15■■□□□ 1.94
MSH6P52701 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC27.14■■□□□ 1.94
MSH6P52701 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC27.14■■□□□ 1.94
MSH6P52701 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC27.14■■□□□ 1.94
MSH6P52701 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC27.14■■□□□ 1.94
MSH6P52701 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC27.14■■□□□ 1.94
MSH6P52701 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC27.14■■□□□ 1.94
MSH6P52701 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC27.14■■□□□ 1.94
MSH6P52701 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC27.14■■□□□ 1.94
MSH6P52701 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC27.14■■□□□ 1.94
MSH6P52701 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC27.14■■□□□ 1.94
MSH6P52701 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC27.14■■□□□ 1.94
MSH6P52701 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC27.14■■□□□ 1.94
MSH6P52701 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC27.14■■□□□ 1.93
MSH6P52701 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC27.14■■□□□ 1.93
MSH6P52701 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC27.14■■□□□ 1.93
MSH6P52701 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC27.14■■□□□ 1.93
MSH6P52701 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC27.13■■□□□ 1.93
MSH6P52701 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC27.13■■□□□ 1.93
MSH6P52701 AC121338.2-201ENST00000622535 1744 ntBASIC27.13■■□□□ 1.93
MSH6P52701 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC27.13■■□□□ 1.93
MSH6P52701 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC27.13■■□□□ 1.93
MSH6P52701 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC27.13■■□□□ 1.93
MSH6P52701 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC27.13■■□□□ 1.93
MSH6P52701 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC27.13■■□□□ 1.93
MSH6P52701 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC27.13■■□□□ 1.93
MSH6P52701 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC27.13■■□□□ 1.93
MSH6P52701 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC27.13■■□□□ 1.93
MSH6P52701 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC27.13■■□□□ 1.93
MSH6P52701 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.93
MSH6P52701 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC27.12■■□□□ 1.93
MSH6P52701 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.93
MSH6P52701 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.93
MSH6P52701 PPIH-202ENST00000372549 327 ntTSL 3 BASIC27.12■■□□□ 1.93
MSH6P52701 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC27.12■■□□□ 1.93
MSH6P52701 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC27.12■■□□□ 1.93
MSH6P52701 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC27.12■■□□□ 1.93
MSH6P52701 IFNL4P1-201ENST00000607083 540 ntBASIC27.12■■□□□ 1.93
MSH6P52701 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC27.12■■□□□ 1.93
MSH6P52701 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC27.12■■□□□ 1.93
MSH6P52701 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.93
MSH6P52701 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.93
MSH6P52701 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.93
MSH6P52701 STK25-234ENST00000535007 2459 ntTSL 2 BASIC27.12■■□□□ 1.93
MSH6P52701 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC27.12■■□□□ 1.93
MSH6P52701 PHGDH-210ENST00000641115 1638 ntBASIC27.12■■□□□ 1.93
MSH6P52701 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC27.12■■□□□ 1.93
MSH6P52701 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC27.11■■□□□ 1.93
MSH6P52701 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC27.11■■□□□ 1.93
MSH6P52701 HBZP1-201ENST00000354915 429 ntBASIC27.11■■□□□ 1.93
MSH6P52701 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC27.11■■□□□ 1.93
MSH6P52701 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC27.11■■□□□ 1.93
MSH6P52701 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC27.11■■□□□ 1.93
MSH6P52701 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC27.11■■□□□ 1.93
MSH6P52701 MIR3180-1-201ENST00000580374 94 ntBASIC27.11■■□□□ 1.93
MSH6P52701 MIR3180-3-201ENST00000584616 94 ntBASIC27.11■■□□□ 1.93
Retrieved 100 of 98,524 protein–RNA pairs in 55 ms