Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC15.89■□□□□ 0.13
CDX1P47902 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC15.89■□□□□ 0.13
CDX1P47902 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
CDX1P47902 TBCB-214ENST00000629269 413 ntTSL 5 BASIC15.89■□□□□ 0.13
CDX1P47902 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
CDX1P47902 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
CDX1P47902 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC15.89■□□□□ 0.13
CDX1P47902 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC15.89■□□□□ 0.13
CDX1P47902 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
CDX1P47902 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC15.89■□□□□ 0.13
CDX1P47902 NXN-202ENST00000537628 1340 ntTSL 3 BASIC15.89■□□□□ 0.13
CDX1P47902 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC15.89■□□□□ 0.13
CDX1P47902 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC15.89■□□□□ 0.13
CDX1P47902 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
CDX1P47902 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC15.88■□□□□ 0.13
CDX1P47902 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC15.88■□□□□ 0.13
CDX1P47902 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC15.88■□□□□ 0.13
CDX1P47902 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
CDX1P47902 AL133373.2-201ENST00000623187 2828 ntBASIC15.88■□□□□ 0.13
CDX1P47902 AL049796.1-201ENST00000565336 1766 ntBASIC15.88■□□□□ 0.13
CDX1P47902 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC15.88■□□□□ 0.13
CDX1P47902 AC011484.1-201ENST00000377652 1995 ntBASIC15.88■□□□□ 0.13
CDX1P47902 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
CDX1P47902 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
CDX1P47902 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
CDX1P47902 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC15.88■□□□□ 0.13
CDX1P47902 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC15.88■□□□□ 0.13
CDX1P47902 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC15.88■□□□□ 0.13
CDX1P47902 AC083880.1-201ENST00000608266 535 ntBASIC15.88■□□□□ 0.13
CDX1P47902 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
CDX1P47902 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
CDX1P47902 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC15.88■□□□□ 0.13
CDX1P47902 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
CDX1P47902 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC15.88■□□□□ 0.13
CDX1P47902 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC15.88■□□□□ 0.13
CDX1P47902 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC15.88■□□□□ 0.13
CDX1P47902 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
CDX1P47902 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC15.88■□□□□ 0.13
CDX1P47902 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC15.88■□□□□ 0.13
CDX1P47902 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
CDX1P47902 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC15.87■□□□□ 0.13
CDX1P47902 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC15.87■□□□□ 0.13
CDX1P47902 AC087633.2-202ENST00000565166 1439 ntBASIC15.87■□□□□ 0.13
CDX1P47902 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
CDX1P47902 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC15.87■□□□□ 0.13
CDX1P47902 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC15.87■□□□□ 0.13
CDX1P47902 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
CDX1P47902 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC15.87■□□□□ 0.13
CDX1P47902 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC15.87■□□□□ 0.13
CDX1P47902 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC15.87■□□□□ 0.13
CDX1P47902 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC15.87■□□□□ 0.13
CDX1P47902 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
CDX1P47902 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC15.87■□□□□ 0.13
CDX1P47902 RNA5SP413-201ENST00000516373 109 ntBASIC15.87■□□□□ 0.13
CDX1P47902 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC15.87■□□□□ 0.13
CDX1P47902 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC15.87■□□□□ 0.13
CDX1P47902 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC15.87■□□□□ 0.13
CDX1P47902 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC15.87■□□□□ 0.13
CDX1P47902 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC15.87■□□□□ 0.13
CDX1P47902 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
CDX1P47902 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC15.87■□□□□ 0.13
CDX1P47902 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC15.87■□□□□ 0.13
CDX1P47902 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
CDX1P47902 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
CDX1P47902 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
CDX1P47902 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC15.87■□□□□ 0.13
CDX1P47902 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC15.86■□□□□ 0.13
CDX1P47902 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC15.86■□□□□ 0.13
CDX1P47902 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC15.86■□□□□ 0.13
CDX1P47902 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
CDX1P47902 AC079598.2-202ENST00000546624 1451 ntBASIC15.86■□□□□ 0.13
CDX1P47902 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
CDX1P47902 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
CDX1P47902 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC15.86■□□□□ 0.13
CDX1P47902 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC15.86■□□□□ 0.13
CDX1P47902 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
CDX1P47902 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
CDX1P47902 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
CDX1P47902 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
CDX1P47902 NME6-213ENST00000451657 871 ntTSL 2 BASIC15.86■□□□□ 0.13
CDX1P47902 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC15.86■□□□□ 0.13
CDX1P47902 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC15.86■□□□□ 0.13
CDX1P47902 AC105020.6-201ENST00000621523 1217 ntBASIC15.86■□□□□ 0.13
CDX1P47902 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC15.86■□□□□ 0.13
CDX1P47902 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC15.86■□□□□ 0.13
CDX1P47902 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC15.86■□□□□ 0.13
CDX1P47902 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
CDX1P47902 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
CDX1P47902 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
CDX1P47902 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
CDX1P47902 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
CDX1P47902 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
CDX1P47902 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
CDX1P47902 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC15.85■□□□□ 0.13
CDX1P47902 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC15.85■□□□□ 0.13
CDX1P47902 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
CDX1P47902 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
CDX1P47902 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
CDX1P47902 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
CDX1P47902 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC15.85■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 19.9 ms