Protein–RNA interactions for Protein: P43489

TNFRSF4, Tumor necrosis factor receptor superfamily member 4, humanhuman

Predictions only

Length 277 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF4P43489 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC19.7■□□□□ 0.74
TNFRSF4P43489 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
TNFRSF4P43489 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC19.7■□□□□ 0.74
TNFRSF4P43489 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
TNFRSF4P43489 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC19.7■□□□□ 0.74
TNFRSF4P43489 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC19.7■□□□□ 0.74
TNFRSF4P43489 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
TNFRSF4P43489 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC19.69■□□□□ 0.74
TNFRSF4P43489 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC19.69■□□□□ 0.74
TNFRSF4P43489 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
TNFRSF4P43489 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
TNFRSF4P43489 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
TNFRSF4P43489 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
TNFRSF4P43489 CA15P1-201ENST00000481698 905 ntBASIC19.69■□□□□ 0.74
TNFRSF4P43489 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC19.69■□□□□ 0.74
TNFRSF4P43489 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC19.69■□□□□ 0.74
TNFRSF4P43489 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC19.69■□□□□ 0.74
TNFRSF4P43489 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
TNFRSF4P43489 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
TNFRSF4P43489 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
TNFRSF4P43489 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
TNFRSF4P43489 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
TNFRSF4P43489 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC19.68■□□□□ 0.74
TNFRSF4P43489 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
TNFRSF4P43489 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC19.68■□□□□ 0.74
TNFRSF4P43489 DET1-207ENST00000564406 2315 ntTSL 2 BASIC19.68■□□□□ 0.74
TNFRSF4P43489 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
TNFRSF4P43489 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
TNFRSF4P43489 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
TNFRSF4P43489 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
TNFRSF4P43489 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
TNFRSF4P43489 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC19.68■□□□□ 0.74
TNFRSF4P43489 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC19.68■□□□□ 0.74
TNFRSF4P43489 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
TNFRSF4P43489 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
TNFRSF4P43489 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC19.68■□□□□ 0.74
TNFRSF4P43489 AC063952.2-201ENST00000498792 1227 ntBASIC19.68■□□□□ 0.74
TNFRSF4P43489 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC19.68■□□□□ 0.74
TNFRSF4P43489 AL353719.1-201ENST00000566847 864 ntBASIC19.68■□□□□ 0.74
TNFRSF4P43489 AL512604.3-201ENST00000569583 964 ntBASIC19.68■□□□□ 0.74
TNFRSF4P43489 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC19.68■□□□□ 0.74
TNFRSF4P43489 AC009237.14-201ENST00000609975 1594 ntBASIC19.68■□□□□ 0.74
TNFRSF4P43489 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
TNFRSF4P43489 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
TNFRSF4P43489 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
TNFRSF4P43489 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
TNFRSF4P43489 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
TNFRSF4P43489 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC19.68■□□□□ 0.74
TNFRSF4P43489 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
TNFRSF4P43489 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
TNFRSF4P43489 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC19.67■□□□□ 0.74
TNFRSF4P43489 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
TNFRSF4P43489 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
TNFRSF4P43489 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
TNFRSF4P43489 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC19.67■□□□□ 0.74
TNFRSF4P43489 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
TNFRSF4P43489 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC19.67■□□□□ 0.74
TNFRSF4P43489 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
TNFRSF4P43489 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC19.67■□□□□ 0.74
TNFRSF4P43489 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
TNFRSF4P43489 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
TNFRSF4P43489 AC117947.1-201ENST00000427448 529 ntBASIC19.67■□□□□ 0.74
TNFRSF4P43489 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC19.67■□□□□ 0.74
TNFRSF4P43489 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
TNFRSF4P43489 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC19.67■□□□□ 0.74
TNFRSF4P43489 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
TNFRSF4P43489 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC19.67■□□□□ 0.74
TNFRSF4P43489 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
TNFRSF4P43489 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
TNFRSF4P43489 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC19.67■□□□□ 0.74
TNFRSF4P43489 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
TNFRSF4P43489 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
TNFRSF4P43489 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC19.67■□□□□ 0.74
TNFRSF4P43489 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
TNFRSF4P43489 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
TNFRSF4P43489 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
TNFRSF4P43489 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
TNFRSF4P43489 PALM-208ENST00000592155 2272 ntTSL 4 BASIC19.66■□□□□ 0.74
TNFRSF4P43489 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
TNFRSF4P43489 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
TNFRSF4P43489 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
TNFRSF4P43489 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC19.66■□□□□ 0.74
TNFRSF4P43489 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC19.66■□□□□ 0.74
TNFRSF4P43489 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC19.66■□□□□ 0.74
TNFRSF4P43489 RNF152P1-201ENST00000397754 604 ntBASIC19.66■□□□□ 0.74
TNFRSF4P43489 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC19.66■□□□□ 0.74
TNFRSF4P43489 GXYLT1P6-201ENST00000456472 1187 ntBASIC19.66■□□□□ 0.74
TNFRSF4P43489 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC19.66■□□□□ 0.74
TNFRSF4P43489 AC022616.7-201ENST00000525383 220 ntBASIC19.66■□□□□ 0.74
TNFRSF4P43489 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC19.66■□□□□ 0.74
TNFRSF4P43489 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
TNFRSF4P43489 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC19.66■□□□□ 0.74
TNFRSF4P43489 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
TNFRSF4P43489 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
TNFRSF4P43489 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC19.66■□□□□ 0.74
TNFRSF4P43489 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC19.66■□□□□ 0.74
TNFRSF4P43489 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
TNFRSF4P43489 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
TNFRSF4P43489 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
TNFRSF4P43489 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC19.65■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 105.9 ms