Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
HLA-DMBP28068 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC14.87□□□□□ -0.03
HLA-DMBP28068 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
HLA-DMBP28068 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
HLA-DMBP28068 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
HLA-DMBP28068 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC14.87□□□□□ -0.03
HLA-DMBP28068 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
HLA-DMBP28068 LSM12P1-201ENST00000411836 588 ntBASIC14.87□□□□□ -0.03
HLA-DMBP28068 APTR-205ENST00000447009 902 ntTSL 2 BASIC14.87□□□□□ -0.03
HLA-DMBP28068 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC14.87□□□□□ -0.03
HLA-DMBP28068 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC14.87□□□□□ -0.03
HLA-DMBP28068 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC14.87□□□□□ -0.03
HLA-DMBP28068 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC14.87□□□□□ -0.03
HLA-DMBP28068 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
HLA-DMBP28068 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
HLA-DMBP28068 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC14.87□□□□□ -0.03
HLA-DMBP28068 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC14.87□□□□□ -0.03
HLA-DMBP28068 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
HLA-DMBP28068 AC020763.4-201ENST00000623414 4170 ntBASIC14.87□□□□□ -0.03
HLA-DMBP28068 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
HLA-DMBP28068 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC14.87□□□□□ -0.03
HLA-DMBP28068 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
HLA-DMBP28068 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
HLA-DMBP28068 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC14.86□□□□□ -0.03
HLA-DMBP28068 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC14.86□□□□□ -0.03
HLA-DMBP28068 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
HLA-DMBP28068 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
HLA-DMBP28068 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
HLA-DMBP28068 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
HLA-DMBP28068 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
HLA-DMBP28068 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
HLA-DMBP28068 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
HLA-DMBP28068 GUSBP6-202ENST00000438529 1198 ntBASIC14.86□□□□□ -0.03
HLA-DMBP28068 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC14.86□□□□□ -0.03
HLA-DMBP28068 SERP1-205ENST00000487153 657 ntTSL 4 BASIC14.86□□□□□ -0.03
HLA-DMBP28068 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
HLA-DMBP28068 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
HLA-DMBP28068 AC023632.3-201ENST00000521633 145 ntBASIC14.86□□□□□ -0.03
HLA-DMBP28068 AL138781.1-201ENST00000566567 1274 ntBASIC14.86□□□□□ -0.03
HLA-DMBP28068 AC142086.2-201ENST00000569753 217 ntBASIC14.86□□□□□ -0.03
HLA-DMBP28068 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC14.86□□□□□ -0.03
HLA-DMBP28068 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
HLA-DMBP28068 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC14.86□□□□□ -0.03
HLA-DMBP28068 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC14.86□□□□□ -0.03
HLA-DMBP28068 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
HLA-DMBP28068 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC14.86□□□□□ -0.03
HLA-DMBP28068 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC14.86□□□□□ -0.03
HLA-DMBP28068 MOK-233ENST00000524214 1539 ntTSL 2 BASIC14.86□□□□□ -0.03
HLA-DMBP28068 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC14.86□□□□□ -0.03
HLA-DMBP28068 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
HLA-DMBP28068 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC14.86□□□□□ -0.03
HLA-DMBP28068 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
HLA-DMBP28068 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC14.85□□□□□ -0.03
HLA-DMBP28068 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC14.85□□□□□ -0.03
HLA-DMBP28068 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
HLA-DMBP28068 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
HLA-DMBP28068 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
HLA-DMBP28068 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC14.85□□□□□ -0.03
HLA-DMBP28068 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
HLA-DMBP28068 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
HLA-DMBP28068 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
HLA-DMBP28068 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC14.85□□□□□ -0.03
HLA-DMBP28068 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
HLA-DMBP28068 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
HLA-DMBP28068 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC14.85□□□□□ -0.03
HLA-DMBP28068 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC14.85□□□□□ -0.03
HLA-DMBP28068 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
HLA-DMBP28068 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
HLA-DMBP28068 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
HLA-DMBP28068 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC14.85□□□□□ -0.03
HLA-DMBP28068 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
HLA-DMBP28068 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
HLA-DMBP28068 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
HLA-DMBP28068 AL512625.2-201ENST00000417533 625 ntBASIC14.85□□□□□ -0.03
HLA-DMBP28068 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC14.85□□□□□ -0.03
HLA-DMBP28068 HES2-205ENST00000487437 968 ntTSL 3 BASIC14.85□□□□□ -0.03
HLA-DMBP28068 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC14.85□□□□□ -0.03
HLA-DMBP28068 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC14.85□□□□□ -0.03
HLA-DMBP28068 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
HLA-DMBP28068 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC14.85□□□□□ -0.03
HLA-DMBP28068 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
HLA-DMBP28068 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
HLA-DMBP28068 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC14.85□□□□□ -0.03
HLA-DMBP28068 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
HLA-DMBP28068 MKRN4P-201ENST00000444706 1521 ntBASIC14.85□□□□□ -0.03
HLA-DMBP28068 AC138932.1-201ENST00000534164 6830 ntBASIC14.85□□□□□ -0.03
HLA-DMBP28068 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
HLA-DMBP28068 NXN-202ENST00000537628 1340 ntTSL 3 BASIC14.85□□□□□ -0.03
HLA-DMBP28068 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
HLA-DMBP28068 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
HLA-DMBP28068 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC14.85□□□□□ -0.03
HLA-DMBP28068 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
HLA-DMBP28068 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
HLA-DMBP28068 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
HLA-DMBP28068 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
HLA-DMBP28068 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
HLA-DMBP28068 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
HLA-DMBP28068 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
HLA-DMBP28068 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
HLA-DMBP28068 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 33.3 ms