Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC20.64■□□□□ 0.89
BDNFP23560 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC20.64■□□□□ 0.89
BDNFP23560 DECR2-212ENST00000627716 352 ntTSL 2 BASIC20.64■□□□□ 0.89
BDNFP23560 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
BDNFP23560 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.89
BDNFP23560 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
BDNFP23560 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
BDNFP23560 PCDHAC2-203ENST00000615316 3011 ntBASIC20.64■□□□□ 0.89
BDNFP23560 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
BDNFP23560 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
BDNFP23560 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
BDNFP23560 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
BDNFP23560 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
BDNFP23560 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC20.63■□□□□ 0.89
BDNFP23560 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
BDNFP23560 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC20.63■□□□□ 0.89
BDNFP23560 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
BDNFP23560 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC20.63■□□□□ 0.89
BDNFP23560 BX088651.1-201ENST00000540551 451 ntBASIC20.63■□□□□ 0.89
BDNFP23560 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC20.63■□□□□ 0.89
BDNFP23560 AL445675.2-201ENST00000620291 557 ntBASIC20.63■□□□□ 0.89
BDNFP23560 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC20.63■□□□□ 0.89
BDNFP23560 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
BDNFP23560 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
BDNFP23560 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
BDNFP23560 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
BDNFP23560 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
BDNFP23560 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
BDNFP23560 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC20.63■□□□□ 0.89
BDNFP23560 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC20.63■□□□□ 0.89
BDNFP23560 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
BDNFP23560 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
BDNFP23560 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
BDNFP23560 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC20.62■□□□□ 0.89
BDNFP23560 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
BDNFP23560 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
BDNFP23560 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
BDNFP23560 LBX2-AS1-202ENST00000603175 2083 ntBASIC20.62■□□□□ 0.89
BDNFP23560 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC20.62■□□□□ 0.89
BDNFP23560 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
BDNFP23560 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
BDNFP23560 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC20.62■□□□□ 0.89
BDNFP23560 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC20.62■□□□□ 0.89
BDNFP23560 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
BDNFP23560 REXO1L10P-201ENST00000615707 1290 ntBASIC20.62■□□□□ 0.89
BDNFP23560 REXO1L12P-201ENST00000622156 912 ntBASIC20.62■□□□□ 0.89
BDNFP23560 AC073912.3-201ENST00000624414 853 ntBASIC20.62■□□□□ 0.89
BDNFP23560 HLA-A-209ENST00000638375 975 ntBASIC20.62■□□□□ 0.89
BDNFP23560 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC20.62■□□□□ 0.89
BDNFP23560 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
BDNFP23560 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC20.62■□□□□ 0.89
BDNFP23560 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC20.62■□□□□ 0.89
BDNFP23560 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
BDNFP23560 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
BDNFP23560 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC20.62■□□□□ 0.89
BDNFP23560 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
BDNFP23560 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC20.62■□□□□ 0.89
BDNFP23560 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC20.62■□□□□ 0.89
BDNFP23560 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
BDNFP23560 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
BDNFP23560 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC20.61■□□□□ 0.89
BDNFP23560 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
BDNFP23560 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
BDNFP23560 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
BDNFP23560 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
BDNFP23560 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
BDNFP23560 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC20.61■□□□□ 0.89
BDNFP23560 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
BDNFP23560 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
BDNFP23560 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
BDNFP23560 PPP1R14BP5-201ENST00000440334 435 ntBASIC20.61■□□□□ 0.89
BDNFP23560 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC20.61■□□□□ 0.89
BDNFP23560 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC20.61■□□□□ 0.89
BDNFP23560 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
BDNFP23560 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC20.61■□□□□ 0.89
BDNFP23560 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC20.61■□□□□ 0.89
BDNFP23560 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC20.61■□□□□ 0.89
BDNFP23560 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC20.61■□□□□ 0.89
BDNFP23560 ABBA01031674.1-201ENST00000635145 728 ntBASIC20.61■□□□□ 0.89
BDNFP23560 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
BDNFP23560 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC20.61■□□□□ 0.89
BDNFP23560 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
BDNFP23560 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
BDNFP23560 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
BDNFP23560 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
BDNFP23560 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
BDNFP23560 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
BDNFP23560 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
BDNFP23560 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
BDNFP23560 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
BDNFP23560 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
BDNFP23560 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
BDNFP23560 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
BDNFP23560 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC20.6■□□□□ 0.89
BDNFP23560 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
BDNFP23560 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC20.6■□□□□ 0.89
BDNFP23560 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC20.6■□□□□ 0.89
BDNFP23560 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC20.6■□□□□ 0.89
BDNFP23560 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC20.6■□□□□ 0.89
BDNFP23560 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC20.6■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 38.8 ms