Protein–RNA interactions for Protein: P18887

XRCC1, DNA repair protein XRCC1, humanhuman

Predicted RBP Predictions only

Length 633 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC1P18887 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC19.48■□□□□ 0.71
XRCC1P18887 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
XRCC1P18887 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC19.48■□□□□ 0.71
XRCC1P18887 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
XRCC1P18887 KRT8P17-201ENST00000453110 1448 ntBASIC19.48■□□□□ 0.71
XRCC1P18887 LBX2-AS1-202ENST00000603175 2083 ntBASIC19.48■□□□□ 0.71
XRCC1P18887 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
XRCC1P18887 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
XRCC1P18887 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC19.48■□□□□ 0.71
XRCC1P18887 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC19.48■□□□□ 0.71
XRCC1P18887 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
XRCC1P18887 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC19.48■□□□□ 0.71
XRCC1P18887 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC19.48■□□□□ 0.71
XRCC1P18887 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC19.48■□□□□ 0.71
XRCC1P18887 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
XRCC1P18887 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
XRCC1P18887 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC19.47■□□□□ 0.71
XRCC1P18887 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
XRCC1P18887 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC19.47■□□□□ 0.71
XRCC1P18887 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
XRCC1P18887 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC19.47■□□□□ 0.71
XRCC1P18887 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC19.47■□□□□ 0.71
XRCC1P18887 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
XRCC1P18887 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
XRCC1P18887 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
XRCC1P18887 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC19.47■□□□□ 0.71
XRCC1P18887 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
XRCC1P18887 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
XRCC1P18887 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC19.47■□□□□ 0.71
XRCC1P18887 AC133681.1-201ENST00000465482 601 ntBASIC19.47■□□□□ 0.71
XRCC1P18887 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC19.47■□□□□ 0.71
XRCC1P18887 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC19.47■□□□□ 0.71
XRCC1P18887 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC19.47■□□□□ 0.71
XRCC1P18887 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC19.47■□□□□ 0.71
XRCC1P18887 AL121829.2-201ENST00000620908 328 ntBASIC19.47■□□□□ 0.71
XRCC1P18887 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
XRCC1P18887 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
XRCC1P18887 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC19.47■□□□□ 0.71
XRCC1P18887 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
XRCC1P18887 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
XRCC1P18887 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC19.47■□□□□ 0.71
XRCC1P18887 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC19.47■□□□□ 0.71
XRCC1P18887 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC19.46■□□□□ 0.71
XRCC1P18887 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC19.46■□□□□ 0.71
XRCC1P18887 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
XRCC1P18887 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
XRCC1P18887 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
XRCC1P18887 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
XRCC1P18887 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC19.46■□□□□ 0.71
XRCC1P18887 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
XRCC1P18887 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC19.46■□□□□ 0.71
XRCC1P18887 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
XRCC1P18887 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC19.46■□□□□ 0.71
XRCC1P18887 LY6E-205ENST00000519611 635 ntTSL 3 BASIC19.46■□□□□ 0.71
XRCC1P18887 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC19.46■□□□□ 0.71
XRCC1P18887 RHOD-202ENST00000532559 538 ntTSL 3 BASIC19.46■□□□□ 0.71
XRCC1P18887 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC19.46■□□□□ 0.71
XRCC1P18887 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC19.46■□□□□ 0.71
XRCC1P18887 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC19.46■□□□□ 0.71
XRCC1P18887 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
XRCC1P18887 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC19.46■□□□□ 0.71
XRCC1P18887 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
XRCC1P18887 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
XRCC1P18887 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC19.45■□□□□ 0.7
XRCC1P18887 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
XRCC1P18887 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
XRCC1P18887 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
XRCC1P18887 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC19.45■□□□□ 0.7
XRCC1P18887 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
XRCC1P18887 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
XRCC1P18887 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
XRCC1P18887 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
XRCC1P18887 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC19.45■□□□□ 0.7
XRCC1P18887 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC19.45■□□□□ 0.7
XRCC1P18887 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC19.45■□□□□ 0.7
XRCC1P18887 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC19.45■□□□□ 0.7
XRCC1P18887 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC19.45■□□□□ 0.7
XRCC1P18887 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC19.45■□□□□ 0.7
XRCC1P18887 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC19.45■□□□□ 0.7
XRCC1P18887 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
XRCC1P18887 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
XRCC1P18887 AL023875.1-201ENST00000640777 796 ntBASIC19.45■□□□□ 0.7
XRCC1P18887 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC19.45■□□□□ 0.7
XRCC1P18887 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
XRCC1P18887 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
XRCC1P18887 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
XRCC1P18887 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
XRCC1P18887 DPP3P2-201ENST00000416030 1696 ntBASIC19.45■□□□□ 0.7
XRCC1P18887 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
XRCC1P18887 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC19.45■□□□□ 0.7
XRCC1P18887 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
XRCC1P18887 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
XRCC1P18887 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
XRCC1P18887 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
XRCC1P18887 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC19.44■□□□□ 0.7
XRCC1P18887 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC19.44■□□□□ 0.7
XRCC1P18887 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
XRCC1P18887 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
XRCC1P18887 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC19.44■□□□□ 0.7
XRCC1P18887 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC19.44■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 19.7 ms