Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC24.72■■□□□ 1.55
CACNA1FO60840 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC24.72■■□□□ 1.55
CACNA1FO60840 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
CACNA1FO60840 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
CACNA1FO60840 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC24.72■■□□□ 1.55
CACNA1FO60840 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC24.72■■□□□ 1.55
CACNA1FO60840 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC24.72■■□□□ 1.55
CACNA1FO60840 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC24.72■■□□□ 1.55
CACNA1FO60840 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC24.72■■□□□ 1.55
CACNA1FO60840 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC24.72■■□□□ 1.55
CACNA1FO60840 AC004980.1-204ENST00000429707 299 ntBASIC24.72■■□□□ 1.55
CACNA1FO60840 CR392000.1-201ENST00000624770 1228 ntBASIC24.72■■□□□ 1.55
CACNA1FO60840 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
CACNA1FO60840 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC24.72■■□□□ 1.55
CACNA1FO60840 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC24.72■■□□□ 1.55
CACNA1FO60840 FSCN1P1-201ENST00000568912 1481 ntBASIC24.72■■□□□ 1.55
CACNA1FO60840 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC24.72■■□□□ 1.55
CACNA1FO60840 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC24.71■■□□□ 1.55
CACNA1FO60840 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
CACNA1FO60840 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC24.71■■□□□ 1.55
CACNA1FO60840 DECR2-212ENST00000627716 352 ntTSL 2 BASIC24.71■■□□□ 1.55
CACNA1FO60840 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
CACNA1FO60840 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC24.71■■□□□ 1.55
CACNA1FO60840 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC24.71■■□□□ 1.55
CACNA1FO60840 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
CACNA1FO60840 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
CACNA1FO60840 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
CACNA1FO60840 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC24.71■■□□□ 1.55
CACNA1FO60840 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
CACNA1FO60840 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC24.71■■□□□ 1.55
CACNA1FO60840 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
CACNA1FO60840 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC24.71■■□□□ 1.55
CACNA1FO60840 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC24.71■■□□□ 1.55
CACNA1FO60840 AC131212.4-201ENST00000623606 975 ntBASIC24.71■■□□□ 1.55
CACNA1FO60840 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC24.71■■□□□ 1.55
CACNA1FO60840 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC24.7■■□□□ 1.54
CACNA1FO60840 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC24.7■■□□□ 1.54
CACNA1FO60840 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC24.7■■□□□ 1.54
CACNA1FO60840 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC24.7■■□□□ 1.54
CACNA1FO60840 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC24.7■■□□□ 1.54
CACNA1FO60840 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC24.7■■□□□ 1.54
CACNA1FO60840 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.54
CACNA1FO60840 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC24.7■■□□□ 1.54
CACNA1FO60840 DERL1-203ENST00000419562 918 ntTSL 2 BASIC24.7■■□□□ 1.54
CACNA1FO60840 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC24.7■■□□□ 1.54
CACNA1FO60840 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC24.7■■□□□ 1.54
CACNA1FO60840 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC24.7■■□□□ 1.54
CACNA1FO60840 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC24.7■■□□□ 1.54
CACNA1FO60840 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC24.7■■□□□ 1.54
CACNA1FO60840 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
CACNA1FO60840 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC24.69■■□□□ 1.54
CACNA1FO60840 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC24.69■■□□□ 1.54
CACNA1FO60840 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC24.69■■□□□ 1.54
CACNA1FO60840 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC24.69■■□□□ 1.54
CACNA1FO60840 MESTP1-201ENST00000404287 994 ntBASIC24.69■■□□□ 1.54
CACNA1FO60840 AL390955.1-201ENST00000428694 934 ntBASIC24.69■■□□□ 1.54
CACNA1FO60840 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC24.69■■□□□ 1.54
CACNA1FO60840 BX088651.1-201ENST00000540551 451 ntBASIC24.69■■□□□ 1.54
CACNA1FO60840 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC24.69■■□□□ 1.54
CACNA1FO60840 KRT8P9-201ENST00000558927 1449 ntBASIC24.69■■□□□ 1.54
CACNA1FO60840 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC24.69■■□□□ 1.54
CACNA1FO60840 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
CACNA1FO60840 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC24.69■■□□□ 1.54
CACNA1FO60840 BID-204ENST00000399767 2129 ntTSL 2 BASIC24.69■■□□□ 1.54
CACNA1FO60840 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC24.69■■□□□ 1.54
CACNA1FO60840 TREX1-205ENST00000625293 1783 ntBASIC24.69■■□□□ 1.54
CACNA1FO60840 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC24.69■■□□□ 1.54
CACNA1FO60840 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
CACNA1FO60840 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC24.69■■□□□ 1.54
CACNA1FO60840 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
CACNA1FO60840 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
CACNA1FO60840 AC096733.2-201ENST00000609937 1394 ntBASIC24.69■■□□□ 1.54
CACNA1FO60840 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC24.69■■□□□ 1.54
CACNA1FO60840 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC24.69■■□□□ 1.54
CACNA1FO60840 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC24.69■■□□□ 1.54
CACNA1FO60840 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC24.68■■□□□ 1.54
CACNA1FO60840 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
CACNA1FO60840 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
CACNA1FO60840 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC24.68■■□□□ 1.54
CACNA1FO60840 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
CACNA1FO60840 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC24.68■■□□□ 1.54
CACNA1FO60840 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC24.68■■□□□ 1.54
CACNA1FO60840 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC24.68■■□□□ 1.54
CACNA1FO60840 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC24.68■■□□□ 1.54
CACNA1FO60840 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC24.68■■□□□ 1.54
CACNA1FO60840 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC24.68■■□□□ 1.54
CACNA1FO60840 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
CACNA1FO60840 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC24.68■■□□□ 1.54
CACNA1FO60840 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC24.68■■□□□ 1.54
CACNA1FO60840 POLI-202ENST00000406285 2030 ntTSL 2 BASIC24.68■■□□□ 1.54
CACNA1FO60840 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC24.68■■□□□ 1.54
CACNA1FO60840 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
CACNA1FO60840 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC24.67■■□□□ 1.54
CACNA1FO60840 AC004951.3-201ENST00000418645 1148 ntBASIC24.67■■□□□ 1.54
CACNA1FO60840 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC24.67■■□□□ 1.54
CACNA1FO60840 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
CACNA1FO60840 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
CACNA1FO60840 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC24.67■■□□□ 1.54
CACNA1FO60840 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC24.67■■□□□ 1.54
CACNA1FO60840 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC24.67■■□□□ 1.54
Retrieved 100 of 98,524 protein–RNA pairs in 23.9 ms