Protein–RNA interactions for Protein: H3BSU7

TMX2-CTNND1, TMX2-CTNND1 readthrough (NMD candidate), humanhuman

Predictions only

Length 103 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TMX2-CTNND1H3BSU7 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
TMX2-CTNND1H3BSU7 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC19.21■□□□□ 0.67
TMX2-CTNND1H3BSU7 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC19.21■□□□□ 0.66
TMX2-CTNND1H3BSU7 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
TMX2-CTNND1H3BSU7 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC19.2■□□□□ 0.66
TMX2-CTNND1H3BSU7 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
TMX2-CTNND1H3BSU7 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC19.2■□□□□ 0.66
TMX2-CTNND1H3BSU7 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
TMX2-CTNND1H3BSU7 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC19.2■□□□□ 0.66
TMX2-CTNND1H3BSU7 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC19.2■□□□□ 0.66
TMX2-CTNND1H3BSU7 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC19.2■□□□□ 0.66
TMX2-CTNND1H3BSU7 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC19.2■□□□□ 0.66
TMX2-CTNND1H3BSU7 TK2-213ENST00000563369 882 ntTSL 5 BASIC19.2■□□□□ 0.66
TMX2-CTNND1H3BSU7 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC19.2■□□□□ 0.66
TMX2-CTNND1H3BSU7 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC19.2■□□□□ 0.66
TMX2-CTNND1H3BSU7 DECR2-212ENST00000627716 352 ntTSL 2 BASIC19.2■□□□□ 0.66
TMX2-CTNND1H3BSU7 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
TMX2-CTNND1H3BSU7 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
TMX2-CTNND1H3BSU7 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC19.2■□□□□ 0.66
TMX2-CTNND1H3BSU7 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
TMX2-CTNND1H3BSU7 SRI-203ENST00000419179 1307 ntTSL 2 BASIC19.2■□□□□ 0.66
TMX2-CTNND1H3BSU7 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
TMX2-CTNND1H3BSU7 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC19.2■□□□□ 0.66
TMX2-CTNND1H3BSU7 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
TMX2-CTNND1H3BSU7 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
TMX2-CTNND1H3BSU7 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
TMX2-CTNND1H3BSU7 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
TMX2-CTNND1H3BSU7 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
TMX2-CTNND1H3BSU7 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC19.19■□□□□ 0.66
TMX2-CTNND1H3BSU7 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
TMX2-CTNND1H3BSU7 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
TMX2-CTNND1H3BSU7 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC19.19■□□□□ 0.66
TMX2-CTNND1H3BSU7 AP002982.1-201ENST00000492365 877 ntBASIC19.19■□□□□ 0.66
TMX2-CTNND1H3BSU7 PNN-205ENST00000556530 601 ntTSL 2 BASIC19.19■□□□□ 0.66
TMX2-CTNND1H3BSU7 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
TMX2-CTNND1H3BSU7 AL353708.3-201ENST00000610272 989 ntBASIC19.19■□□□□ 0.66
TMX2-CTNND1H3BSU7 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
TMX2-CTNND1H3BSU7 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
TMX2-CTNND1H3BSU7 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
TMX2-CTNND1H3BSU7 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
TMX2-CTNND1H3BSU7 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
TMX2-CTNND1H3BSU7 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC19.19■□□□□ 0.66
TMX2-CTNND1H3BSU7 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
TMX2-CTNND1H3BSU7 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
TMX2-CTNND1H3BSU7 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
TMX2-CTNND1H3BSU7 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
TMX2-CTNND1H3BSU7 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC19.18■□□□□ 0.66
TMX2-CTNND1H3BSU7 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
TMX2-CTNND1H3BSU7 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
TMX2-CTNND1H3BSU7 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
TMX2-CTNND1H3BSU7 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
TMX2-CTNND1H3BSU7 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
TMX2-CTNND1H3BSU7 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC19.18■□□□□ 0.66
TMX2-CTNND1H3BSU7 TSPY15P-201ENST00000457163 923 ntBASIC19.18■□□□□ 0.66
TMX2-CTNND1H3BSU7 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC19.18■□□□□ 0.66
TMX2-CTNND1H3BSU7 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC19.18■□□□□ 0.66
TMX2-CTNND1H3BSU7 PPOX-219ENST00000544598 813 ntTSL 2 BASIC19.18■□□□□ 0.66
TMX2-CTNND1H3BSU7 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC19.18■□□□□ 0.66
TMX2-CTNND1H3BSU7 GRAP-204ENST00000573099 846 ntTSL 3 BASIC19.18■□□□□ 0.66
TMX2-CTNND1H3BSU7 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC19.18■□□□□ 0.66
TMX2-CTNND1H3BSU7 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC19.18■□□□□ 0.66
TMX2-CTNND1H3BSU7 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC19.18■□□□□ 0.66
TMX2-CTNND1H3BSU7 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
TMX2-CTNND1H3BSU7 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC19.18■□□□□ 0.66
TMX2-CTNND1H3BSU7 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
TMX2-CTNND1H3BSU7 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC19.18■□□□□ 0.66
TMX2-CTNND1H3BSU7 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
TMX2-CTNND1H3BSU7 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
TMX2-CTNND1H3BSU7 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC19.17■□□□□ 0.66
TMX2-CTNND1H3BSU7 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
TMX2-CTNND1H3BSU7 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
TMX2-CTNND1H3BSU7 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC19.17■□□□□ 0.66
TMX2-CTNND1H3BSU7 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC19.17■□□□□ 0.66
TMX2-CTNND1H3BSU7 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
TMX2-CTNND1H3BSU7 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
TMX2-CTNND1H3BSU7 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
TMX2-CTNND1H3BSU7 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
TMX2-CTNND1H3BSU7 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
TMX2-CTNND1H3BSU7 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
TMX2-CTNND1H3BSU7 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
TMX2-CTNND1H3BSU7 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
TMX2-CTNND1H3BSU7 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
TMX2-CTNND1H3BSU7 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
TMX2-CTNND1H3BSU7 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC19.17■□□□□ 0.66
TMX2-CTNND1H3BSU7 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC19.17■□□□□ 0.66
TMX2-CTNND1H3BSU7 F2R-202ENST00000505600 442 ntTSL 2 BASIC19.17■□□□□ 0.66
TMX2-CTNND1H3BSU7 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
TMX2-CTNND1H3BSU7 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
TMX2-CTNND1H3BSU7 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC19.17■□□□□ 0.66
TMX2-CTNND1H3BSU7 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
TMX2-CTNND1H3BSU7 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
TMX2-CTNND1H3BSU7 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
TMX2-CTNND1H3BSU7 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
TMX2-CTNND1H3BSU7 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
TMX2-CTNND1H3BSU7 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC19.17■□□□□ 0.66
TMX2-CTNND1H3BSU7 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
TMX2-CTNND1H3BSU7 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
TMX2-CTNND1H3BSU7 PALM-207ENST00000590161 2137 ntTSL 4 BASIC19.16■□□□□ 0.66
TMX2-CTNND1H3BSU7 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
TMX2-CTNND1H3BSU7 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC19.16■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 34.5 ms