Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC14.29□□□□□ -0.12
SMKR1H3BMG3 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC14.29□□□□□ -0.12
SMKR1H3BMG3 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
SMKR1H3BMG3 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
SMKR1H3BMG3 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
SMKR1H3BMG3 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC14.29□□□□□ -0.12
SMKR1H3BMG3 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC14.29□□□□□ -0.12
SMKR1H3BMG3 SNTB2-201ENST00000336278 9789 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
SMKR1H3BMG3 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC14.28□□□□□ -0.12
SMKR1H3BMG3 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
SMKR1H3BMG3 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
SMKR1H3BMG3 PKD1P1-201ENST00000458669 6805 ntBASIC14.28□□□□□ -0.12
SMKR1H3BMG3 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
SMKR1H3BMG3 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
SMKR1H3BMG3 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
SMKR1H3BMG3 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
SMKR1H3BMG3 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC14.28□□□□□ -0.12
SMKR1H3BMG3 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
SMKR1H3BMG3 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
SMKR1H3BMG3 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
SMKR1H3BMG3 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
SMKR1H3BMG3 AL356441.2-201ENST00000443009 864 ntBASIC14.28□□□□□ -0.12
SMKR1H3BMG3 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
SMKR1H3BMG3 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
SMKR1H3BMG3 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
SMKR1H3BMG3 AL161938.1-201ENST00000569833 2180 ntBASIC14.28□□□□□ -0.12
SMKR1H3BMG3 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC14.28□□□□□ -0.12
SMKR1H3BMG3 MPST-208ENST00000628507 698 ntTSL 5 BASIC14.28□□□□□ -0.12
SMKR1H3BMG3 CPT2-209ENST00000636935 803 ntTSL 5 BASIC14.28□□□□□ -0.12
SMKR1H3BMG3 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
SMKR1H3BMG3 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.12
SMKR1H3BMG3 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
SMKR1H3BMG3 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.12
SMKR1H3BMG3 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
SMKR1H3BMG3 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
SMKR1H3BMG3 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
SMKR1H3BMG3 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
SMKR1H3BMG3 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC14.27□□□□□ -0.13
SMKR1H3BMG3 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC14.27□□□□□ -0.13
SMKR1H3BMG3 TPRG1LP1-201ENST00000598702 760 ntBASIC14.27□□□□□ -0.13
SMKR1H3BMG3 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC14.27□□□□□ -0.13
SMKR1H3BMG3 BCL2-202ENST00000398117 7461 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
SMKR1H3BMG3 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
SMKR1H3BMG3 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
SMKR1H3BMG3 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
SMKR1H3BMG3 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
SMKR1H3BMG3 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.13
SMKR1H3BMG3 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.13
SMKR1H3BMG3 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
SMKR1H3BMG3 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC14.27□□□□□ -0.13
SMKR1H3BMG3 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
SMKR1H3BMG3 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
SMKR1H3BMG3 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.13
SMKR1H3BMG3 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
SMKR1H3BMG3 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
SMKR1H3BMG3 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.13
SMKR1H3BMG3 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
SMKR1H3BMG3 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC14.27□□□□□ -0.13
SMKR1H3BMG3 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
SMKR1H3BMG3 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC14.26□□□□□ -0.13
SMKR1H3BMG3 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC14.26□□□□□ -0.13
SMKR1H3BMG3 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
SMKR1H3BMG3 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
SMKR1H3BMG3 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
SMKR1H3BMG3 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
SMKR1H3BMG3 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
SMKR1H3BMG3 UBE2O-201ENST00000319380 5436 ntAPPRIS P2 TSL 1 (best) BASIC14.26□□□□□ -0.13
SMKR1H3BMG3 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
SMKR1H3BMG3 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
SMKR1H3BMG3 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
SMKR1H3BMG3 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
SMKR1H3BMG3 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
SMKR1H3BMG3 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC14.26□□□□□ -0.13
SMKR1H3BMG3 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
SMKR1H3BMG3 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
SMKR1H3BMG3 ADAMTS13-204ENST00000371911 1155 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
SMKR1H3BMG3 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
SMKR1H3BMG3 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC14.26□□□□□ -0.13
SMKR1H3BMG3 AL136116.3-201ENST00000402907 1138 ntBASIC14.26□□□□□ -0.13
SMKR1H3BMG3 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
SMKR1H3BMG3 AC091799.1-201ENST00000422823 811 ntBASIC14.26□□□□□ -0.13
SMKR1H3BMG3 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC14.26□□□□□ -0.13
SMKR1H3BMG3 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC14.26□□□□□ -0.13
SMKR1H3BMG3 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC14.26□□□□□ -0.13
SMKR1H3BMG3 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
SMKR1H3BMG3 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
SMKR1H3BMG3 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC14.26□□□□□ -0.13
SMKR1H3BMG3 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC14.26□□□□□ -0.13
SMKR1H3BMG3 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
SMKR1H3BMG3 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC14.26□□□□□ -0.13
SMKR1H3BMG3 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
SMKR1H3BMG3 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
SMKR1H3BMG3 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC14.26□□□□□ -0.13
SMKR1H3BMG3 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
SMKR1H3BMG3 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC14.26□□□□□ -0.13
SMKR1H3BMG3 AC135050.7-201ENST00000624508 2218 ntBASIC14.26□□□□□ -0.13
SMKR1H3BMG3 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC14.26□□□□□ -0.13
SMKR1H3BMG3 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
SMKR1H3BMG3 AC006333.2-201ENST00000607957 2099 ntBASIC14.26□□□□□ -0.13
SMKR1H3BMG3 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 18.9 ms