Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 ZNF788-202ENST00000397759 777 ntAPPRIS P1 TSL 5 BASIC5.89□□□□□ -1.47
BDNFP23560 RN7SKP279-201ENST00000411383 298 ntBASIC5.89□□□□□ -1.47
BDNFP23560 AL359636.2-201ENST00000412262 259 ntTSL 3 BASIC5.89□□□□□ -1.47
BDNFP23560 NPM1P4-201ENST00000414095 812 ntBASIC5.89□□□□□ -1.47
BDNFP23560 TMEM183AP1-205ENST00000432739 290 ntBASIC5.89□□□□□ -1.47
BDNFP23560 AL357052.1-201ENST00000443504 381 ntTSL 3 BASIC5.89□□□□□ -1.47
BDNFP23560 AP003774.2-202ENST00000449694 341 ntTSL 3 BASIC5.89□□□□□ -1.47
BDNFP23560 AL513343.1-201ENST00000451818 792 ntBASIC5.89□□□□□ -1.47
BDNFP23560 TTTY19-201ENST00000453955 269 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
BDNFP23560 AC091976.1-201ENST00000458002 448 ntTSL 3 BASIC5.89□□□□□ -1.47
BDNFP23560 RN7SL51P-201ENST00000468230 285 ntBASIC5.89□□□□□ -1.47
BDNFP23560 PDCD10-207ENST00000471885 764 ntTSL 5 BASIC5.89□□□□□ -1.47
BDNFP23560 PDCL3P4-201ENST00000489621 720 ntBASIC5.89□□□□□ -1.47
BDNFP23560 AC092834.1-201ENST00000506514 442 ntTSL 3 BASIC5.89□□□□□ -1.47
BDNFP23560 RN7SKP99-201ENST00000517028 307 ntBASIC5.89□□□□□ -1.47
BDNFP23560 AC079917.1-201ENST00000527828 584 ntTSL 3 BASIC5.89□□□□□ -1.47
BDNFP23560 AC079917.1-202ENST00000534059 625 ntTSL 3 BASIC5.89□□□□□ -1.47
BDNFP23560 AC068446.3-201ENST00000555285 382 ntBASIC5.89□□□□□ -1.47
BDNFP23560 LINC01243-201ENST00000562065 721 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
BDNFP23560 AC090312.1-201ENST00000580637 348 ntBASIC5.89□□□□□ -1.47
BDNFP23560 CBX3P2-202ENST00000583365 535 ntBASIC5.89□□□□□ -1.47
BDNFP23560 AC011451.1-201ENST00000591336 405 ntTSL 3 BASIC5.89□□□□□ -1.47
BDNFP23560 AC067968.2-201ENST00000592583 566 ntTSL 4 BASIC5.89□□□□□ -1.47
BDNFP23560 PACRG-210ENST00000611387 279 ntTSL 5 BASIC5.89□□□□□ -1.47
BDNFP23560 AC123768.3-201ENST00000613733 523 ntTSL 3 BASIC5.89□□□□□ -1.47
BDNFP23560 AP004607.9-201ENST00000618202 316 ntBASIC5.89□□□□□ -1.47
BDNFP23560 AC005840.5-201ENST00000619166 599 ntBASIC5.89□□□□□ -1.47
BDNFP23560 SNHG5-214ENST00000623001 598 ntTSL 2 BASIC5.89□□□□□ -1.47
BDNFP23560 RAPGEF2-201ENST00000264431 6949 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
BDNFP23560 ZNF559-ZNF177-201ENST00000434737 2340 ntAPPRIS ALT2 TSL 2 BASIC5.89□□□□□ -1.47
BDNFP23560 MMP12-201ENST00000571244 1874 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
BDNFP23560 DSPP-201ENST00000282478 4281 ntAPPRIS P1 TSL 5 BASIC5.89□□□□□ -1.47
BDNFP23560 AC098798.1-201ENST00000503998 1447 ntTSL 5 BASIC5.89□□□□□ -1.47
BDNFP23560 VPS50-220ENST00000544910 5736 ntTSL 2 BASIC5.89□□□□□ -1.47
BDNFP23560 ZNF788-203ENST00000430298 3941 ntTSL 2 BASIC5.89□□□□□ -1.47
BDNFP23560 TOPBP1-201ENST00000260810 5378 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
BDNFP23560 AC104964.3-201ENST00000606115 2860 ntBASIC5.88□□□□□ -1.47
BDNFP23560 MACF1-232ENST00000567887 24319 ntAPPRIS P5 TSL 5 BASIC5.88□□□□□ -1.47
BDNFP23560 ZBTB38-202ENST00000441582 3662 ntAPPRIS P1 TSL 2 BASIC5.88□□□□□ -1.47
BDNFP23560 LINC01630-202ENST00000578152 3188 ntTSL 2 BASIC5.88□□□□□ -1.47
BDNFP23560 DBT-202ENST00000370132 10799 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
BDNFP23560 DUSP19-202ENST00000354221 5176 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
BDNFP23560 OR7C1-203ENST00000641666 11711 ntAPPRIS P1 BASIC5.88□□□□□ -1.47
BDNFP23560 LRRN3-204ENST00000451085 3725 ntAPPRIS P1 TSL 2 BASIC5.88□□□□□ -1.47
BDNFP23560 ABI3BP-215ENST00000495063 3714 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
BDNFP23560 C1orf194-203ENST00000369948 663 ntAPPRIS P1 TSL 2 BASIC5.88□□□□□ -1.47
BDNFP23560 MIR551A-201ENST00000385042 96 ntBASIC5.88□□□□□ -1.47
BDNFP23560 Z93019.1-201ENST00000416450 973 ntBASIC5.88□□□□□ -1.47
BDNFP23560 AL160163.1-201ENST00000417465 403 ntTSL 3 BASIC5.88□□□□□ -1.47
BDNFP23560 OR6C64P-201ENST00000419708 825 ntBASIC5.88□□□□□ -1.47
BDNFP23560 CFL1P1-202ENST00000432948 411 ntBASIC5.88□□□□□ -1.47
BDNFP23560 KRT8P51-201ENST00000438938 274 ntBASIC5.88□□□□□ -1.47
BDNFP23560 NANOGP9-201ENST00000439890 892 ntBASIC5.88□□□□□ -1.47
BDNFP23560 SPRYD7P1-201ENST00000443861 570 ntBASIC5.88□□□□□ -1.47
BDNFP23560 AC006326.1-201ENST00000445465 787 ntBASIC5.88□□□□□ -1.47
BDNFP23560 AL596266.1-201ENST00000448132 400 ntBASIC5.88□□□□□ -1.47
BDNFP23560 TPMTP4-201ENST00000450749 678 ntBASIC5.88□□□□□ -1.47
BDNFP23560 HMGB1P5-202ENST00000451497 985 ntBASIC5.88□□□□□ -1.47
BDNFP23560 AC074386.1-201ENST00000476560 767 ntBASIC5.88□□□□□ -1.47
BDNFP23560 AC106732.1-201ENST00000512458 550 ntTSL 4 BASIC5.88□□□□□ -1.47
BDNFP23560 AC063979.2-201ENST00000513767 958 ntTSL 5 BASIC5.88□□□□□ -1.47
BDNFP23560 BX510359.5-201ENST00000515651 304 ntBASIC5.88□□□□□ -1.47
BDNFP23560 AF117829.1-208ENST00000521996 915 ntTSL 3 BASIC5.88□□□□□ -1.47
BDNFP23560 AC113386.1-201ENST00000523584 381 ntTSL 5 BASIC5.88□□□□□ -1.47
BDNFP23560 PMS2P3-207ENST00000529061 717 ntBASIC5.88□□□□□ -1.47
BDNFP23560 TNFSF11-205ENST00000544862 818 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
BDNFP23560 TRPT1-216ENST00000546133 382 ntTSL 2 BASIC5.88□□□□□ -1.47
BDNFP23560 AL109741.3-201ENST00000561748 592 ntBASIC5.88□□□□□ -1.47
BDNFP23560 AC079414.1-201ENST00000563114 488 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
BDNFP23560 LINC02129-201ENST00000564381 692 ntTSL 5 BASIC5.88□□□□□ -1.47
BDNFP23560 AP005242.1-201ENST00000583946 467 ntTSL 3 BASIC5.88□□□□□ -1.47
BDNFP23560 AP005120.1-202ENST00000584321 506 ntTSL 4 BASIC5.88□□□□□ -1.47
BDNFP23560 AC011444.3-201ENST00000588342 325 ntTSL 3 BASIC5.88□□□□□ -1.47
BDNFP23560 AC060780.2-201ENST00000589047 198 ntBASIC5.88□□□□□ -1.47
BDNFP23560 SATB1-AS1-222ENST00000600177 751 ntTSL 5 BASIC5.88□□□□□ -1.47
BDNFP23560 SUGT1P3-202ENST00000604259 383 ntBASIC5.88□□□□□ -1.47
BDNFP23560 AC009318.3-201ENST00000616916 503 ntBASIC5.88□□□□□ -1.47
BDNFP23560 ADAMTS9-AS1-210ENST00000625328 699 ntTSL 5 BASIC5.88□□□□□ -1.47
BDNFP23560 AC063952.1-204ENST00000635496 927 ntTSL 5 BASIC5.88□□□□□ -1.47
BDNFP23560 ZNF215-205ENST00000529903 1396 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
BDNFP23560 DLGAP1-AS2-202ENST00000573177 1388 ntBASIC5.88□□□□□ -1.47
BDNFP23560 RARSP1-201ENST00000542842 1418 ntBASIC5.88□□□□□ -1.47
BDNFP23560 AC006288.1-201ENST00000565320 1463 ntTSL 3 BASIC5.88□□□□□ -1.47
BDNFP23560 FBXW12-201ENST00000296438 1647 ntAPPRIS P3 TSL 1 (best) BASIC5.88□□□□□ -1.47
BDNFP23560 LINC02030-201ENST00000492683 1602 ntTSL 5 BASIC5.88□□□□□ -1.47
BDNFP23560 C11orf65-208ENST00000615746 2711 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
BDNFP23560 LINC01553-203ENST00000521074 4329 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
BDNFP23560 AC004817.4-201ENST00000602396 3625 ntBASIC5.87□□□□□ -1.47
BDNFP23560 C8orf34-202ENST00000337103 3652 ntAPPRIS ALT2 TSL 1 (best) BASIC5.87□□□□□ -1.47
BDNFP23560 TTI1-203ENST00000449821 3791 ntAPPRIS P1 TSL 2 BASIC5.87□□□□□ -1.47
BDNFP23560 LINC01187-201ENST00000506431 2314 ntTSL 5 BASIC5.87□□□□□ -1.47
BDNFP23560 UGT8-202ENST00000394511 2448 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
BDNFP23560 GTDC1-204ENST00000392869 10514 ntAPPRIS P1 TSL 5 BASIC5.87□□□□□ -1.47
BDNFP23560 VPS13B-203ENST00000358544 14094 ntAPPRIS P4 TSL 1 (best) BASIC5.87□□□□□ -1.47
BDNFP23560 FLG2-201ENST00000388718 9124 ntAPPRIS P1 TSL 5 BASIC5.87□□□□□ -1.47
BDNFP23560 RNMT-201ENST00000262173 6051 ntAPPRIS P1 TSL 2 BASIC5.87□□□□□ -1.47
BDNFP23560 IFI16-201ENST00000295809 2867 ntAPPRIS ALT2 TSL 5 BASIC5.87□□□□□ -1.47
BDNFP23560 DSC3-201ENST00000360428 6939 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
BDNFP23560 BRCA1-203ENST00000357654 7094 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
BDNFP23560 RIC3-202ENST00000335425 5223 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 105.2 ms