Protein–RNA interactions for Protein: Q9UBQ0

VPS29, Vacuolar protein sorting-associated protein 29, humanhuman

Predictions only

Length 182 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29Q9UBQ0 SNORA73.1-201ENST00000363107 205 ntBASIC4.79□□□□□ -1.64
VPS29Q9UBQ0 DEC1-201ENST00000374016 1251 ntAPPRIS P2 TSL 1 (best) BASIC4.79□□□□□ -1.64
VPS29Q9UBQ0 SNORA70.10-201ENST00000384515 134 ntBASIC4.79□□□□□ -1.64
VPS29Q9UBQ0 CCL7-203ENST00000394630 687 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
VPS29Q9UBQ0 AL391361.1-201ENST00000405580 489 ntBASIC4.79□□□□□ -1.64
VPS29Q9UBQ0 RNU6ATAC21P-201ENST00000408656 126 ntBASIC4.79□□□□□ -1.64
VPS29Q9UBQ0 TCEA1P1-201ENST00000449716 880 ntBASIC4.79□□□□□ -1.64
VPS29Q9UBQ0 RN7SL172P-201ENST00000460535 303 ntBASIC4.79□□□□□ -1.64
VPS29Q9UBQ0 RPS17P2-201ENST00000461663 408 ntBASIC4.79□□□□□ -1.64
VPS29Q9UBQ0 RN7SL799P-201ENST00000475891 298 ntBASIC4.79□□□□□ -1.64
VPS29Q9UBQ0 UBA52P7-201ENST00000486088 380 ntBASIC4.79□□□□□ -1.64
VPS29Q9UBQ0 AC069304.1-201ENST00000491593 704 ntBASIC4.79□□□□□ -1.64
VPS29Q9UBQ0 AC072052.1-201ENST00000496556 306 ntBASIC4.79□□□□□ -1.64
VPS29Q9UBQ0 ZCCHC10-210ENST00000513848 876 ntAPPRIS ALT2 TSL 2 BASIC4.79□□□□□ -1.64
VPS29Q9UBQ0 AC015522.1-201ENST00000523678 640 ntTSL 3 BASIC4.79□□□□□ -1.64
VPS29Q9UBQ0 UQCRB-209ENST00000523920 695 ntTSL 5 BASIC4.79□□□□□ -1.64
VPS29Q9UBQ0 MS4A6A-210ENST00000529054 1160 ntTSL 5 BASIC4.79□□□□□ -1.64
VPS29Q9UBQ0 AC021393.1-201ENST00000531077 433 ntTSL 3 BASIC4.79□□□□□ -1.64
VPS29Q9UBQ0 AP003557.1-201ENST00000531715 585 ntTSL 3 BASIC4.79□□□□□ -1.64
VPS29Q9UBQ0 SNHG1-218ENST00000541615 748 ntTSL 5 BASIC4.79□□□□□ -1.64
VPS29Q9UBQ0 C16orf52-205ENST00000567004 951 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
VPS29Q9UBQ0 AC011447.4-201ENST00000587562 111 ntBASIC4.79□□□□□ -1.64
VPS29Q9UBQ0 AC105254.2-201ENST00000603636 436 ntBASIC4.79□□□□□ -1.64
VPS29Q9UBQ0 MIR4435-2HG-220ENST00000609902 603 ntTSL 3 BASIC4.79□□□□□ -1.64
VPS29Q9UBQ0 AC015914.2-201ENST00000618167 288 ntBASIC4.79□□□□□ -1.64
VPS29Q9UBQ0 AC000374.1-201ENST00000434698 1745 ntBASIC4.79□□□□□ -1.64
VPS29Q9UBQ0 C2orf66-201ENST00000342506 1669 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
VPS29Q9UBQ0 SESN1-201ENST00000302071 2718 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
VPS29Q9UBQ0 DNAH7-202ENST00000409063 1845 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
VPS29Q9UBQ0 ZNF207-203ENST00000394670 13781 ntAPPRIS ALT1 TSL 1 (best) BASIC4.79□□□□□ -1.64
VPS29Q9UBQ0 ZNF273-204ENST00000476120 2000 ntAPPRIS P1 TSL 3 BASIC4.79□□□□□ -1.64
VPS29Q9UBQ0 SKP1-202ENST00000353411 9474 ntAPPRIS P4 TSL 1 (best) BASIC4.79□□□□□ -1.64
VPS29Q9UBQ0 AL672167.1-204ENST00000641875 3017 ntBASIC4.78□□□□□ -1.64
VPS29Q9UBQ0 SSR1-202ENST00000397511 3248 ntTSL 5 BASIC4.78□□□□□ -1.64
VPS29Q9UBQ0 GABRA2-211ENST00000514090 3401 ntAPPRIS P1 TSL 5 BASIC4.78□□□□□ -1.64
VPS29Q9UBQ0 ARHGAP28-205ENST00000531294 2171 ntAPPRIS ALT2 TSL 5 BASIC4.78□□□□□ -1.64
VPS29Q9UBQ0 CREM-202ENST00000342105 1541 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
VPS29Q9UBQ0 AP000542.2-201ENST00000623199 6179 ntBASIC4.78□□□□□ -1.64
VPS29Q9UBQ0 LMOD2-202ENST00000458573 2346 ntAPPRIS P1 TSL 2 BASIC4.78□□□□□ -1.64
VPS29Q9UBQ0 AL158835.1-203ENST00000415305 3149 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
VPS29Q9UBQ0 DCLRE1A-201ENST00000361384 4468 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
VPS29Q9UBQ0 ZBTB21-201ENST00000310826 7449 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
VPS29Q9UBQ0 VCAM1-203ENST00000370115 2475 ntTSL 5 BASIC4.78□□□□□ -1.64
VPS29Q9UBQ0 VPS13D-214ENST00000620676 16320 ntAPPRIS P4 TSL 1 (best) BASIC4.78□□□□□ -1.64
VPS29Q9UBQ0 THAP12P5-201ENST00000405864 2275 ntBASIC4.78□□□□□ -1.64
VPS29Q9UBQ0 LINC00989-201ENST00000508174 2080 ntTSL 3 BASIC4.78□□□□□ -1.64
VPS29Q9UBQ0 NXF4-202ENST00000416098 1465 ntBASIC4.78□□□□□ -1.64
VPS29Q9UBQ0 RFC3-202ENST00000434425 1461 ntTSL 5 BASIC4.78□□□□□ -1.64
VPS29Q9UBQ0 SNORA66-201ENST00000384792 133 ntBASIC4.78□□□□□ -1.64
VPS29Q9UBQ0 MIR223-201ENST00000385204 110 ntBASIC4.78□□□□□ -1.64
VPS29Q9UBQ0 KLRC3-202ENST00000396439 1028 ntAPPRIS ALT2 TSL 5 BASIC4.78□□□□□ -1.64
VPS29Q9UBQ0 DNAJA1P4-201ENST00000406473 1166 ntBASIC4.78□□□□□ -1.64
VPS29Q9UBQ0 LINC00342-201ENST00000412393 654 ntTSL 3 BASIC4.78□□□□□ -1.64
VPS29Q9UBQ0 RANP7-201ENST00000418085 644 ntBASIC4.78□□□□□ -1.64
VPS29Q9UBQ0 NANOGP4-201ENST00000427230 913 ntBASIC4.78□□□□□ -1.64
VPS29Q9UBQ0 FSIP2-AS1-201ENST00000429929 440 ntTSL 3 BASIC4.78□□□□□ -1.64
VPS29Q9UBQ0 AC073052.1-201ENST00000440417 714 ntBASIC4.78□□□□□ -1.64
VPS29Q9UBQ0 KRTAP8-2P-201ENST00000440620 186 ntBASIC4.78□□□□□ -1.64
VPS29Q9UBQ0 OR7E125P-201ENST00000443450 846 ntBASIC4.78□□□□□ -1.64
VPS29Q9UBQ0 AL138767.2-201ENST00000446794 168 ntTSL 3 BASIC4.78□□□□□ -1.64
VPS29Q9UBQ0 AC068492.1-201ENST00000448672 469 ntTSL 3 BASIC4.78□□□□□ -1.64
VPS29Q9UBQ0 FAR2P1-206ENST00000449736 709 ntBASIC4.78□□□□□ -1.64
VPS29Q9UBQ0 IGHV5-78-201ENST00000450948 295 ntBASIC4.78□□□□□ -1.64
VPS29Q9UBQ0 PCBP1-AS1-237ENST00000452431 1194 ntTSL 4 BASIC4.78□□□□□ -1.64
VPS29Q9UBQ0 AP000472.1-201ENST00000452500 530 ntTSL 2 BASIC4.78□□□□□ -1.64
VPS29Q9UBQ0 RPS4XP12-201ENST00000461747 709 ntBASIC4.78□□□□□ -1.64
VPS29Q9UBQ0 COPS8P2-201ENST00000473228 627 ntBASIC4.78□□□□□ -1.64
VPS29Q9UBQ0 AC079841.1-201ENST00000481228 950 ntBASIC4.78□□□□□ -1.64
VPS29Q9UBQ0 HMGN2P25-201ENST00000486956 268 ntBASIC4.78□□□□□ -1.64
VPS29Q9UBQ0 RN7SL30P-201ENST00000488416 306 ntBASIC4.78□□□□□ -1.64
VPS29Q9UBQ0 RN7SL244P-201ENST00000493405 297 ntBASIC4.78□□□□□ -1.64
VPS29Q9UBQ0 HMGB3P16-201ENST00000508037 287 ntBASIC4.78□□□□□ -1.64
VPS29Q9UBQ0 RNA5SP249-201ENST00000516127 99 ntBASIC4.78□□□□□ -1.64
VPS29Q9UBQ0 IGHVII-44-2-201ENST00000517728 250 ntBASIC4.78□□□□□ -1.64
VPS29Q9UBQ0 RAD21-204ENST00000518055 896 ntTSL 2 BASIC4.78□□□□□ -1.64
VPS29Q9UBQ0 AC068775.2-201ENST00000539033 998 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
VPS29Q9UBQ0 LSM3P2-201ENST00000551246 273 ntBASIC4.78□□□□□ -1.64
VPS29Q9UBQ0 AL049830.4-201ENST00000555149 351 ntBASIC4.78□□□□□ -1.64
VPS29Q9UBQ0 AL355076.2-201ENST00000555736 544 ntTSL 5 BASIC4.78□□□□□ -1.64
VPS29Q9UBQ0 AC022196.1-202ENST00000559570 462 ntTSL 3 BASIC4.78□□□□□ -1.64
VPS29Q9UBQ0 AC066612.1-202ENST00000561094 518 ntTSL 5 BASIC4.78□□□□□ -1.64
VPS29Q9UBQ0 AC007225.2-201ENST00000562529 256 ntBASIC4.78□□□□□ -1.64
VPS29Q9UBQ0 AC092683.1-203ENST00000594050 654 ntTSL 5 BASIC4.78□□□□□ -1.64
VPS29Q9UBQ0 Z98949.1-202ENST00000600211 1282 ntTSL 5 BASIC4.78□□□□□ -1.64
VPS29Q9UBQ0 MIR6768-201ENST00000610734 72 ntBASIC4.78□□□□□ -1.64
VPS29Q9UBQ0 AL049794.2-201ENST00000616301 365 ntBASIC4.78□□□□□ -1.64
VPS29Q9UBQ0 PTK2-206ENST00000517712 3351 ntTSL 2 BASIC4.78□□□□□ -1.64
VPS29Q9UBQ0 CDC23-202ENST00000394886 3155 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
VPS29Q9UBQ0 KLHL4-202ENST00000373119 5818 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
VPS29Q9UBQ0 SCN3A-202ENST00000360093 9123 ntAPPRIS ALT1 TSL 5 BASIC4.78□□□□□ -1.64
VPS29Q9UBQ0 PPP1R2P3-201ENST00000522232 1991 ntAPPRIS P1 BASIC4.78□□□□□ -1.64
VPS29Q9UBQ0 AC245407.1-201ENST00000621489 2538 ntTSL 2 BASIC4.78□□□□□ -1.64
VPS29Q9UBQ0 OR9G1-202ENST00000642097 3611 ntAPPRIS P1 BASIC4.78□□□□□ -1.64
VPS29Q9UBQ0 UBE4A-203ENST00000545354 2149 ntTSL 2 BASIC4.78□□□□□ -1.64
VPS29Q9UBQ0 USP8-202ENST00000396444 19026 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
VPS29Q9UBQ0 FRYL-209ENST00000506685 1940 ntTSL 5 BASIC4.78□□□□□ -1.64
VPS29Q9UBQ0 GABRG2-202ENST00000361925 3767 ntTSL 3 BASIC4.77□□□□□ -1.65
VPS29Q9UBQ0 PABPC1P6-201ENST00000445594 1829 ntBASIC4.77□□□□□ -1.65
VPS29Q9UBQ0 GABRG2-224ENST00000640574 3150 ntTSL 5 BASIC4.77□□□□□ -1.65
VPS29Q9UBQ0 VCAM1-202ENST00000347652 2812 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 70 ms