Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 AC100832.1-201ENST00000471945 383 ntBASIC5.91□□□□□ -1.46
BDNFP23560 AC107398.1-201ENST00000486904 505 ntBASIC5.91□□□□□ -1.46
BDNFP23560 RN7SL547P-201ENST00000490793 290 ntBASIC5.91□□□□□ -1.46
BDNFP23560 NPM1P28-201ENST00000492269 840 ntBASIC5.91□□□□□ -1.46
BDNFP23560 AC111193.1-201ENST00000504097 155 ntBASIC5.91□□□□□ -1.46
BDNFP23560 LINC01017-201ENST00000508823 768 ntTSL 3 BASIC5.91□□□□□ -1.46
BDNFP23560 COMMD10-206ENST00000515539 869 ntTSL 3 BASIC5.91□□□□□ -1.46
BDNFP23560 AC010261.2-201ENST00000515563 588 ntTSL 2 BASIC5.91□□□□□ -1.46
BDNFP23560 IGKV2-18-201ENST00000522607 343 ntBASIC5.91□□□□□ -1.46
BDNFP23560 AC134775.1-201ENST00000531268 464 ntTSL 2 BASIC5.91□□□□□ -1.46
BDNFP23560 AC104009.1-203ENST00000531304 571 ntTSL 4 BASIC5.91□□□□□ -1.46
BDNFP23560 AC103681.1-202ENST00000534342 449 ntTSL 3 BASIC5.91□□□□□ -1.46
BDNFP23560 AC130404.1-201ENST00000539362 739 ntTSL 2 BASIC5.91□□□□□ -1.46
BDNFP23560 PARPBP-212ENST00000543784 992 ntTSL 2 BASIC5.91□□□□□ -1.46
BDNFP23560 AC137627.1-201ENST00000545761 289 ntBASIC5.91□□□□□ -1.46
BDNFP23560 AC078814.2-201ENST00000552996 535 ntTSL 4 BASIC5.91□□□□□ -1.46
BDNFP23560 AC025175.1-201ENST00000606482 759 ntBASIC5.91□□□□□ -1.46
BDNFP23560 AC010245.2-201ENST00000606908 1167 ntBASIC5.91□□□□□ -1.46
BDNFP23560 AL359513.1-201ENST00000614364 557 ntBASIC5.91□□□□□ -1.46
BDNFP23560 PAK3-213ENST00000620137 2130 ntTSL 5 BASIC5.91□□□□□ -1.46
BDNFP23560 AC024023.1-201ENST00000624530 922 ntBASIC5.91□□□□□ -1.46
BDNFP23560 MIR325HG-202ENST00000626832 598 ntTSL 4 BASIC5.91□□□□□ -1.46
BDNFP23560 CGA-206ENST00000630630 832 ntTSL 2 BASIC5.91□□□□□ -1.46
BDNFP23560 DGKB-201ENST00000399322 6684 ntAPPRIS P2 TSL 5 BASIC5.91□□□□□ -1.46
BDNFP23560 RABGAP1L-202ENST00000325589 1880 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
BDNFP23560 ZNF442-205ENST00000545749 1884 ntAPPRIS P1 TSL 5 BASIC5.91□□□□□ -1.46
BDNFP23560 CEP164P1-202ENST00000456938 2472 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
BDNFP23560 SLC4A10-202ENST00000375514 5710 ntAPPRIS ALT1 TSL 2 BASIC5.91□□□□□ -1.46
BDNFP23560 AL513550.1-201ENST00000418945 1638 ntTSL 2 BASIC5.91□□□□□ -1.46
BDNFP23560 NCOA7-208ENST00000438495 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC5.91□□□□□ -1.46
BDNFP23560 FBXO3-208ENST00000530401 7410 ntTSL 2 BASIC5.91□□□□□ -1.46
BDNFP23560 ADH4-207ENST00000505590 1400 ntTSL 5 BASIC5.91□□□□□ -1.46
BDNFP23560 PSD3-204ENST00000440756 11690 ntAPPRIS ALT2 TSL 5 BASIC5.9□□□□□ -1.46
BDNFP23560 CEACAM1-201ENST00000161559 3519 ntAPPRIS P3 TSL 1 (best) BASIC5.9□□□□□ -1.46
BDNFP23560 PSG1-201ENST00000244296 2276 ntAPPRIS P3 TSL 1 (best) BASIC5.9□□□□□ -1.46
BDNFP23560 SIAH1-202ENST00000380006 3352 ntAPPRIS P3 BASIC5.9□□□□□ -1.46
BDNFP23560 AC106870.1-201ENST00000359823 200 ntTSL 3 BASIC5.9□□□□□ -1.46
BDNFP23560 RN7SKP162-201ENST00000363605 345 ntBASIC5.9□□□□□ -1.46
BDNFP23560 RNA5SP234-201ENST00000363916 119 ntBASIC5.9□□□□□ -1.46
BDNFP23560 SNORD51.1-201ENST00000365405 77 ntBASIC5.9□□□□□ -1.46
BDNFP23560 RNU1-136P-201ENST00000384181 164 ntBASIC5.9□□□□□ -1.46
BDNFP23560 AC005042.1-201ENST00000393397 800 ntBASIC5.9□□□□□ -1.46
BDNFP23560 AL009179.1-201ENST00000406085 265 ntBASIC5.9□□□□□ -1.46
BDNFP23560 SNX10-204ENST00000409838 944 ntTSL 1 (best) BASIC5.9□□□□□ -1.46
BDNFP23560 RN7SKP247-201ENST00000411094 308 ntBASIC5.9□□□□□ -1.46
BDNFP23560 OR13Z1P-201ENST00000416141 834 ntBASIC5.9□□□□□ -1.46
BDNFP23560 GTF3AP1-201ENST00000416942 1004 ntBASIC5.9□□□□□ -1.46
BDNFP23560 FAM204CP-201ENST00000424489 642 ntBASIC5.9□□□□□ -1.46
BDNFP23560 TEX41-206ENST00000432608 661 ntTSL 3 BASIC5.9□□□□□ -1.46
BDNFP23560 AL355357.1-201ENST00000433531 417 ntTSL 2 BASIC5.9□□□□□ -1.46
BDNFP23560 OR6D1P-201ENST00000436165 939 ntBASIC5.9□□□□□ -1.46
BDNFP23560 LINC02038-201ENST00000439074 702 ntTSL 4 BASIC5.9□□□□□ -1.46
BDNFP23560 LINC01496-201ENST00000448761 460 ntTSL 5 BASIC5.9□□□□□ -1.46
BDNFP23560 LINC01344-202ENST00000449842 571 ntTSL 3 BASIC5.9□□□□□ -1.46
BDNFP23560 AC239809.1-201ENST00000450470 217 ntBASIC5.9□□□□□ -1.46
BDNFP23560 NREP-207ENST00000450761 636 ntAPPRIS P1 TSL 4 BASIC5.9□□□□□ -1.46
BDNFP23560 AL133445.1-201ENST00000467051 452 ntBASIC5.9□□□□□ -1.46
BDNFP23560 AC090602.1-201ENST00000469695 252 ntBASIC5.9□□□□□ -1.46
BDNFP23560 LINC02040-201ENST00000481004 556 ntTSL 5 BASIC5.9□□□□□ -1.46
BDNFP23560 SYT14P1-201ENST00000481459 721 ntBASIC5.9□□□□□ -1.46
BDNFP23560 AC090638.1-201ENST00000498296 909 ntBASIC5.9□□□□□ -1.46
BDNFP23560 F11-AS1-201ENST00000505103 1178 ntTSL 1 (best) BASIC5.9□□□□□ -1.46
BDNFP23560 AC097103.2-204ENST00000510068 569 ntTSL 3 BASIC5.9□□□□□ -1.46
BDNFP23560 AC021733.1-201ENST00000519786 325 ntTSL 3 BASIC5.9□□□□□ -1.46
BDNFP23560 LINC01947-201ENST00000523742 566 ntTSL 4 BASIC5.9□□□□□ -1.46
BDNFP23560 NOP56P3-201ENST00000549457 385 ntBASIC5.9□□□□□ -1.46
BDNFP23560 AL512310.9-201ENST00000553311 948 ntBASIC5.9□□□□□ -1.46
BDNFP23560 SMARCE1P3-201ENST00000553649 1231 ntBASIC5.9□□□□□ -1.46
BDNFP23560 AL049875.1-202ENST00000556620 857 ntTSL 3 BASIC5.9□□□□□ -1.46
BDNFP23560 MEG8-217ENST00000556637 924 ntTSL 5 BASIC5.9□□□□□ -1.46
BDNFP23560 AC027176.2-201ENST00000559166 746 ntBASIC5.9□□□□□ -1.46
BDNFP23560 AC012616.1-201ENST00000600294 197 ntBASIC5.9□□□□□ -1.46
BDNFP23560 AC024563.1-201ENST00000601860 618 ntTSL 2 BASIC5.9□□□□□ -1.46
BDNFP23560 INTS6-AS1-226ENST00000610018 672 ntTSL 5 BASIC5.9□□□□□ -1.46
BDNFP23560 AC239803.2-201ENST00000610161 430 ntBASIC5.9□□□□□ -1.46
BDNFP23560 AL118522.2-201ENST00000616045 615 ntBASIC5.9□□□□□ -1.46
BDNFP23560 MIR6826-201ENST00000617808 98 ntBASIC5.9□□□□□ -1.46
BDNFP23560 MIR8080-201ENST00000622224 89 ntBASIC5.9□□□□□ -1.46
BDNFP23560 AC244517.5-203ENST00000624778 517 ntTSL 2 BASIC5.9□□□□□ -1.46
BDNFP23560 AL022344.1-201ENST00000439913 3965 ntTSL 1 (best) BASIC5.9□□□□□ -1.47
BDNFP23560 CIR1P2-201ENST00000514821 1342 ntBASIC5.9□□□□□ -1.47
BDNFP23560 AL355488.2-201ENST00000609909 2850 ntBASIC5.9□□□□□ -1.47
BDNFP23560 NBPF20-203ENST00000594479 3670 ntTSL 5 BASIC5.9□□□□□ -1.47
BDNFP23560 USP15-201ENST00000280377 4748 ntAPPRIS ALT1 TSL 1 (best) BASIC5.9□□□□□ -1.47
BDNFP23560 CXCL9-201ENST00000264888 2740 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.47
BDNFP23560 RFX3-204ENST00000382004 9307 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
BDNFP23560 MAPK10-370ENST00000641943 4117 ntAPPRIS P2 BASIC5.89□□□□□ -1.47
BDNFP23560 AC026523.2-201ENST00000625039 7739 ntBASIC5.89□□□□□ -1.47
BDNFP23560 AC025470.1-201ENST00000510053 2032 ntBASIC5.89□□□□□ -1.47
BDNFP23560 MTFR1-203ENST00000458689 2500 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
BDNFP23560 ZNF493-203ENST00000392288 5023 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
BDNFP23560 LMOD3-201ENST00000420581 4086 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
BDNFP23560 RAD51AP1-201ENST00000228843 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC5.89□□□□□ -1.47
BDNFP23560 CUBN-202ENST00000377833 11949 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
BDNFP23560 AC011155.1-201ENST00000316512 456 ntBASIC5.89□□□□□ -1.47
BDNFP23560 RN7SKP6-201ENST00000364795 319 ntBASIC5.89□□□□□ -1.47
BDNFP23560 ASXL1-203ENST00000375689 812 ntTSL 5 BASIC5.89□□□□□ -1.47
BDNFP23560 BPHL-201ENST00000380368 797 ntTSL 5 BASIC5.89□□□□□ -1.47
BDNFP23560 RNU6-40P-201ENST00000384254 107 ntBASIC5.89□□□□□ -1.47
BDNFP23560 TRAV23DV6-201ENST00000390451 409 ntAPPRIS P1 BASIC5.89□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 123.6 ms