Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 CTNND1-214ENST00000526772 4966 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
TDP1Q9NUW8 POU1F1-202ENST00000350375 1491 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
TDP1Q9NUW8 LIPF-203ENST00000394375 1470 ntTSL 2 BASIC6.02□□□□□ -1.45
TDP1Q9NUW8 NXF4-202ENST00000416098 1465 ntBASIC6.02□□□□□ -1.45
TDP1Q9NUW8 PHC3-203ENST00000467570 2595 ntTSL 2 BASIC6.02□□□□□ -1.45
TDP1Q9NUW8 SOS1-201ENST00000395038 4123 ntAPPRIS ALT2 TSL 5 BASIC6.01□□□□□ -1.45
TDP1Q9NUW8 CRYZ-204ENST00000370872 1592 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
TDP1Q9NUW8 AL355306.2-206ENST00000635233 1903 ntTSL 5 BASIC6.01□□□□□ -1.45
TDP1Q9NUW8 BDNF-205ENST00000395981 4071 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
TDP1Q9NUW8 PPP2R5E-202ENST00000422769 3478 ntTSL 2 BASIC6.01□□□□□ -1.45
TDP1Q9NUW8 AC007842.1-201ENST00000597336 2039 ntBASIC6.01□□□□□ -1.45
TDP1Q9NUW8 AL136985.3-202ENST00000636386 2708 ntTSL 5 BASIC6.01□□□□□ -1.45
TDP1Q9NUW8 RNF217-201ENST00000359704 1784 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
TDP1Q9NUW8 YES1P1-201ENST00000418510 1628 ntBASIC6.01□□□□□ -1.45
TDP1Q9NUW8 AMELX-201ENST00000348912 737 ntTSL 5 BASIC6.01□□□□□ -1.45
TDP1Q9NUW8 OR14A16-201ENST00000357627 930 ntAPPRIS P1 BASIC6.01□□□□□ -1.45
TDP1Q9NUW8 RNU6-932P-201ENST00000391108 106 ntBASIC6.01□□□□□ -1.45
TDP1Q9NUW8 GSTM2-205ENST00000414179 982 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
TDP1Q9NUW8 EDNRB-AS1-201ENST00000422405 601 ntTSL 5 BASIC6.01□□□□□ -1.45
TDP1Q9NUW8 AP001476.3-201ENST00000429512 415 ntTSL 3 BASIC6.01□□□□□ -1.45
TDP1Q9NUW8 LYPLA1P1-201ENST00000434514 622 ntBASIC6.01□□□□□ -1.45
TDP1Q9NUW8 Z83846.1-201ENST00000446798 265 ntBASIC6.01□□□□□ -1.45
TDP1Q9NUW8 SEPT14P24-201ENST00000447236 180 ntBASIC6.01□□□□□ -1.45
TDP1Q9NUW8 CALM1P2-201ENST00000452941 448 ntBASIC6.01□□□□□ -1.45
TDP1Q9NUW8 AC239798.3-201ENST00000454459 408 ntBASIC6.01□□□□□ -1.45
TDP1Q9NUW8 PTGES3P5-201ENST00000455109 434 ntBASIC6.01□□□□□ -1.45
TDP1Q9NUW8 AKR1C2-203ENST00000455190 1098 ntTSL 2 BASIC6.01□□□□□ -1.45
TDP1Q9NUW8 RN7SL72P-201ENST00000460697 269 ntBASIC6.01□□□□□ -1.45
TDP1Q9NUW8 AC026348.1-201ENST00000462549 1053 ntBASIC6.01□□□□□ -1.45
TDP1Q9NUW8 SIAH1P1-201ENST00000479411 923 ntBASIC6.01□□□□□ -1.45
TDP1Q9NUW8 RPL38P3-201ENST00000484463 213 ntBASIC6.01□□□□□ -1.45
TDP1Q9NUW8 RPL32P33-201ENST00000487023 394 ntBASIC6.01□□□□□ -1.45
TDP1Q9NUW8 AC108693.1-201ENST00000496068 432 ntBASIC6.01□□□□□ -1.45
TDP1Q9NUW8 AC105924.1-201ENST00000504057 339 ntTSL 3 BASIC6.01□□□□□ -1.45
TDP1Q9NUW8 CDH12P2-201ENST00000504393 298 ntBASIC6.01□□□□□ -1.45
TDP1Q9NUW8 LINC00603-201ENST00000507027 733 ntTSL 5 BASIC6.01□□□□□ -1.45
TDP1Q9NUW8 LINC00977-201ENST00000509893 1163 ntTSL 2 BASIC6.01□□□□□ -1.45
TDP1Q9NUW8 LINC01365-202ENST00000512219 637 ntTSL 5 BASIC6.01□□□□□ -1.45
TDP1Q9NUW8 AC109361.2-202ENST00000512514 483 ntTSL 3 BASIC6.01□□□□□ -1.45
TDP1Q9NUW8 AC106744.2-201ENST00000513955 898 ntTSL 5 BASIC6.01□□□□□ -1.45
TDP1Q9NUW8 MIR2117-201ENST00000516780 80 ntBASIC6.01□□□□□ -1.45
TDP1Q9NUW8 WASHC5-AS1-201ENST00000519140 587 ntTSL 4 BASIC6.01□□□□□ -1.45
TDP1Q9NUW8 LINC02143-201ENST00000519929 520 ntTSL 3 BASIC6.01□□□□□ -1.45
TDP1Q9NUW8 HDAC2-AS2-217ENST00000523087 493 ntTSL 3 BASIC6.01□□□□□ -1.45
TDP1Q9NUW8 AC025437.3-201ENST00000523178 771 ntTSL 5 BASIC6.01□□□□□ -1.45
TDP1Q9NUW8 MINCR-206ENST00000524335 499 ntTSL 2 BASIC6.01□□□□□ -1.45
TDP1Q9NUW8 AP002815.1-201ENST00000533740 386 ntTSL 3 BASIC6.01□□□□□ -1.45
TDP1Q9NUW8 AC091515.1-201ENST00000548110 679 ntBASIC6.01□□□□□ -1.45
TDP1Q9NUW8 AC078820.1-201ENST00000548702 742 ntTSL 3 BASIC6.01□□□□□ -1.45
TDP1Q9NUW8 AC016134.1-201ENST00000565259 701 ntTSL 3 BASIC6.01□□□□□ -1.45
TDP1Q9NUW8 AC074050.3-201ENST00000569175 441 ntTSL 4 BASIC6.01□□□□□ -1.45
TDP1Q9NUW8 MTND3P13-201ENST00000574391 343 ntBASIC6.01□□□□□ -1.45
TDP1Q9NUW8 AL133410.1-201ENST00000574939 546 ntTSL 3 BASIC6.01□□□□□ -1.45
TDP1Q9NUW8 AL136311.1-213ENST00000586466 520 ntTSL 5 BASIC6.01□□□□□ -1.45
TDP1Q9NUW8 AC079610.2-201ENST00000604818 690 ntBASIC6.01□□□□□ -1.45
TDP1Q9NUW8 AC092954.1-201ENST00000609121 445 ntBASIC6.01□□□□□ -1.45
TDP1Q9NUW8 Metazoa_SRP.43-201ENST00000616394 271 ntBASIC6.01□□□□□ -1.45
TDP1Q9NUW8 DLG2-AS1_1.1-201ENST00000622319 213 ntBASIC6.01□□□□□ -1.45
TDP1Q9NUW8 AL390318.1-201ENST00000624564 687 ntBASIC6.01□□□□□ -1.45
TDP1Q9NUW8 UGP2-232ENST00000640075 567 ntTSL 5 BASIC6.01□□□□□ -1.45
TDP1Q9NUW8 TRAPPC13-202ENST00000399438 3221 ntAPPRIS ALT1 TSL 2 BASIC6.01□□□□□ -1.45
TDP1Q9NUW8 ORC3-202ENST00000392844 2512 ntAPPRIS ALT1 TSL 1 (best) BASIC6.01□□□□□ -1.45
TDP1Q9NUW8 ZNF271P-205ENST00000639248 4573 ntTSL 5 BASIC6.01□□□□□ -1.45
TDP1Q9NUW8 MRE11-203ENST00000393241 2604 ntAPPRIS ALT1 TSL 5 BASIC6.01□□□□□ -1.45
TDP1Q9NUW8 PGM3-215ENST00000616566 5905 ntTSL 2 BASIC6.01□□□□□ -1.45
TDP1Q9NUW8 ZNF525-201ENST00000467003 6107 ntTSL 4 BASIC6.01□□□□□ -1.45
TDP1Q9NUW8 CLSPN-202ENST00000318121 4169 ntAPPRIS P3 TSL 1 (best) BASIC6.01□□□□□ -1.45
TDP1Q9NUW8 AC012321.1-201ENST00000561622 1588 ntBASIC6.01□□□□□ -1.45
TDP1Q9NUW8 ZNF699-203ENST00000591998 3358 ntAPPRIS P1 TSL 5 BASIC6.01□□□□□ -1.45
TDP1Q9NUW8 MRE11P1-201ENST00000464884 2127 ntBASIC6.01□□□□□ -1.45
TDP1Q9NUW8 SMARCE1-208ENST00000474246 2124 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
TDP1Q9NUW8 LUZP2-201ENST00000336930 3553 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
TDP1Q9NUW8 SRRM1P3-201ENST00000426911 2678 ntBASIC6.01□□□□□ -1.45
TDP1Q9NUW8 SSH2-201ENST00000269033 9327 ntAPPRIS P3 TSL 1 (best) BASIC6.01□□□□□ -1.45
TDP1Q9NUW8 TAF9-205ENST00000506736 1331 ntAPPRIS P2 TSL 1 (best) BASIC6□□□□□ -1.45
TDP1Q9NUW8 RAD54B-201ENST00000297592 1879 ntTSL 2 BASIC6□□□□□ -1.45
TDP1Q9NUW8 ZNF283-203ENST00000588797 2428 ntTSL 2 BASIC6□□□□□ -1.45
TDP1Q9NUW8 PATL1-201ENST00000300146 4072 ntAPPRIS P1 TSL 1 (best) BASIC6□□□□□ -1.45
TDP1Q9NUW8 RIMS1-219ENST00000523963 3097 ntTSL 2 BASIC6□□□□□ -1.45
TDP1Q9NUW8 LINC01504-201ENST00000436054 2078 ntTSL 2 BASIC6□□□□□ -1.45
TDP1Q9NUW8 AC130304.1-201ENST00000622942 2385 ntBASIC6□□□□□ -1.45
TDP1Q9NUW8 NLRP11-201ENST00000589093 3417 ntAPPRIS P2 TSL 1 (best) BASIC6□□□□□ -1.45
TDP1Q9NUW8 KIF27-204ENST00000413982 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC6□□□□□ -1.45
TDP1Q9NUW8 RAB30-214ENST00000534141 3746 ntTSL 1 (best) BASIC6□□□□□ -1.45
TDP1Q9NUW8 ZC2HC1B-201ENST00000237275 1002 ntAPPRIS P1 TSL 1 (best) BASIC6□□□□□ -1.45
TDP1Q9NUW8 RNASE2-201ENST00000304625 755 ntAPPRIS P1 TSL 1 (best) BASIC6□□□□□ -1.45
TDP1Q9NUW8 OR2AE1-201ENST00000316368 1071 ntAPPRIS P1 BASIC6□□□□□ -1.45
TDP1Q9NUW8 FDCSP-201ENST00000317987 566 ntAPPRIS P1 TSL 1 (best) BASIC6□□□□□ -1.45
TDP1Q9NUW8 AL159987.1-201ENST00000347911 293 ntBASIC6□□□□□ -1.45
TDP1Q9NUW8 RN7SKP162-201ENST00000363605 345 ntBASIC6□□□□□ -1.45
TDP1Q9NUW8 GPR52-201ENST00000367685 1088 ntAPPRIS P1 BASIC6□□□□□ -1.45
TDP1Q9NUW8 CTNNAL1-203ENST00000374594 824 ntTSL 3 BASIC6□□□□□ -1.45
TDP1Q9NUW8 GKN1-201ENST00000377938 814 ntAPPRIS P1 TSL 1 (best) BASIC6□□□□□ -1.45
TDP1Q9NUW8 OR2W4P-201ENST00000406496 926 ntBASIC6□□□□□ -1.45
TDP1Q9NUW8 MIR1178-201ENST00000408396 91 ntBASIC6□□□□□ -1.45
TDP1Q9NUW8 AL357752.1-201ENST00000412817 349 ntBASIC6□□□□□ -1.45
TDP1Q9NUW8 AC099654.1-202ENST00000415836 564 ntTSL 4 BASIC6□□□□□ -1.45
TDP1Q9NUW8 OXSM-202ENST00000420173 1256 ntTSL 1 (best) BASIC6□□□□□ -1.45
TDP1Q9NUW8 AC008164.1-201ENST00000423925 564 ntTSL 4 BASIC6□□□□□ -1.45
TDP1Q9NUW8 AL391832.1-201ENST00000423963 423 ntTSL 5 BASIC6□□□□□ -1.45
Retrieved 100 of 98,524 protein–RNA pairs in 83 ms