Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 AC098829.1-202ENST00000513384 537 ntTSL 3 BASIC5.21□□□□□ -1.58
CCDC3Q9BQI4 CDH12P4-201ENST00000517835 295 ntBASIC5.21□□□□□ -1.58
CCDC3Q9BQI4 CDH12P3-201ENST00000517935 295 ntBASIC5.21□□□□□ -1.58
CCDC3Q9BQI4 CDH12P1-201ENST00000518435 295 ntBASIC5.21□□□□□ -1.58
CCDC3Q9BQI4 PIH1D2-208ENST00000532211 1103 ntAPPRIS P1 TSL 5 BASIC5.21□□□□□ -1.58
CCDC3Q9BQI4 AC079328.3-201ENST00000558905 691 ntTSL 3 BASIC5.21□□□□□ -1.58
CCDC3Q9BQI4 POU1F1-203ENST00000560656 647 ntTSL 5 BASIC5.21□□□□□ -1.58
CCDC3Q9BQI4 RPS15A-203ENST00000563390 525 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
CCDC3Q9BQI4 AC093330.1-201ENST00000583326 568 ntTSL 4 BASIC5.21□□□□□ -1.58
CCDC3Q9BQI4 AC005244.2-201ENST00000585228 718 ntTSL 3 BASIC5.21□□□□□ -1.58
CCDC3Q9BQI4 AC006116.4-201ENST00000589671 452 ntTSL 2 BASIC5.21□□□□□ -1.58
CCDC3Q9BQI4 MIR6748-201ENST00000610433 71 ntBASIC5.21□□□□□ -1.58
CCDC3Q9BQI4 AP001784.1-201ENST00000624107 428 ntBASIC5.21□□□□□ -1.58
CCDC3Q9BQI4 AC079298.3-201ENST00000624941 977 ntTSL 3 BASIC5.21□□□□□ -1.58
CCDC3Q9BQI4 FAT3-201ENST00000409404 19030 ntAPPRIS P1 TSL 5 BASIC5.21□□□□□ -1.58
CCDC3Q9BQI4 ESRRG-219ENST00000487276 3015 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
CCDC3Q9BQI4 ITGAV-204ENST00000433736 3288 ntAPPRIS ALT2 TSL 2 BASIC5.21□□□□□ -1.58
CCDC3Q9BQI4 SLCO1C1-209ENST00000545604 2557 ntTSL 2 BASIC5.21□□□□□ -1.58
CCDC3Q9BQI4 AC114774.1-201ENST00000507410 1770 ntBASIC5.21□□□□□ -1.58
CCDC3Q9BQI4 RGSL1-201ENST00000294854 3696 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
CCDC3Q9BQI4 RAB18-209ENST00000621805 4894 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
CCDC3Q9BQI4 GLCE-201ENST00000261858 5037 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
CCDC3Q9BQI4 GART-205ENST00000381839 3469 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
CCDC3Q9BQI4 TNRC6B-201ENST00000301923 15958 ntAPPRIS P3 TSL 5 BASIC5.21□□□□□ -1.58
CCDC3Q9BQI4 AL160286.3-201ENST00000569644 3294 ntTSL 2 BASIC5.21□□□□□ -1.58
CCDC3Q9BQI4 CSMD3-204ENST00000455883 12485 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
CCDC3Q9BQI4 DIAPH3-208ENST00000498416 2249 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
CCDC3Q9BQI4 EPHA4-202ENST00000409854 3454 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
CCDC3Q9BQI4 UPRT-207ENST00000530743 1636 ntTSL 2 BASIC5.2□□□□□ -1.58
CCDC3Q9BQI4 CEACAM1-201ENST00000161559 3519 ntAPPRIS P3 TSL 1 (best) BASIC5.2□□□□□ -1.58
CCDC3Q9BQI4 LYVE1-201ENST00000256178 3273 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
CCDC3Q9BQI4 RN7SKP103-201ENST00000363848 320 ntBASIC5.2□□□□□ -1.58
CCDC3Q9BQI4 RNU6-883P-201ENST00000384597 107 ntBASIC5.2□□□□□ -1.58
CCDC3Q9BQI4 RNU11-201ENST00000387069 134 ntBASIC5.2□□□□□ -1.58
CCDC3Q9BQI4 HSPA8P15-201ENST00000401676 786 ntBASIC5.2□□□□□ -1.58
CCDC3Q9BQI4 AL589655.1-201ENST00000405398 482 ntBASIC5.2□□□□□ -1.58
CCDC3Q9BQI4 DNAJA1P4-201ENST00000406473 1166 ntBASIC5.2□□□□□ -1.58
CCDC3Q9BQI4 PPP3R1-203ENST00000409752 851 ntTSL 3 BASIC5.2□□□□□ -1.58
CCDC3Q9BQI4 AC211486.3-201ENST00000412694 621 ntBASIC5.2□□□□□ -1.58
CCDC3Q9BQI4 RBMY2KP-201ENST00000418221 992 ntBASIC5.2□□□□□ -1.58
CCDC3Q9BQI4 AC013470.3-201ENST00000420252 1194 ntBASIC5.2□□□□□ -1.58
CCDC3Q9BQI4 AL356806.1-201ENST00000422524 916 ntBASIC5.2□□□□□ -1.58
CCDC3Q9BQI4 CR848007.2-201ENST00000424918 787 ntBASIC5.2□□□□□ -1.58
CCDC3Q9BQI4 MTATP6P11-201ENST00000428071 670 ntBASIC5.2□□□□□ -1.58
CCDC3Q9BQI4 AC073465.2-201ENST00000440938 498 ntBASIC5.2□□□□□ -1.58
CCDC3Q9BQI4 AC092647.3-201ENST00000443044 633 ntBASIC5.2□□□□□ -1.58
CCDC3Q9BQI4 LINC01828-201ENST00000445514 531 ntTSL 4 BASIC5.2□□□□□ -1.58
CCDC3Q9BQI4 AC093581.1-201ENST00000446411 461 ntTSL 2 BASIC5.2□□□□□ -1.58
CCDC3Q9BQI4 AC019117.1-204ENST00000451792 442 ntTSL 3 BASIC5.2□□□□□ -1.58
CCDC3Q9BQI4 AZGP1P2-201ENST00000454506 345 ntBASIC5.2□□□□□ -1.58
CCDC3Q9BQI4 AC009127.1-201ENST00000467090 155 ntBASIC5.2□□□□□ -1.58
CCDC3Q9BQI4 PLGLA-202ENST00000482249 475 ntTSL 3 BASIC5.2□□□□□ -1.58
CCDC3Q9BQI4 OR9N1P-201ENST00000491296 333 ntBASIC5.2□□□□□ -1.58
CCDC3Q9BQI4 AC010451.1-201ENST00000509057 556 ntTSL 3 BASIC5.2□□□□□ -1.58
CCDC3Q9BQI4 AC097515.1-201ENST00000512370 435 ntTSL 2 BASIC5.2□□□□□ -1.58
CCDC3Q9BQI4 SPRY4-AS1-205ENST00000514303 152 ntTSL 3 BASIC5.2□□□□□ -1.58
CCDC3Q9BQI4 AC026688.1-201ENST00000520639 1168 ntBASIC5.2□□□□□ -1.58
CCDC3Q9BQI4 AC013701.1-201ENST00000522657 465 ntBASIC5.2□□□□□ -1.58
CCDC3Q9BQI4 AC136777.2-201ENST00000522979 358 ntBASIC5.2□□□□□ -1.58
CCDC3Q9BQI4 AC024940.3-201ENST00000538551 316 ntBASIC5.2□□□□□ -1.58
CCDC3Q9BQI4 AC092490.3-201ENST00000545370 572 ntBASIC5.2□□□□□ -1.58
CCDC3Q9BQI4 AC006511.5-202ENST00000546339 1198 ntTSL 5 BASIC5.2□□□□□ -1.58
CCDC3Q9BQI4 AC144548.2-201ENST00000550231 946 ntTSL 3 BASIC5.2□□□□□ -1.58
CCDC3Q9BQI4 LINC00687-203ENST00000558175 696 ntTSL 3 BASIC5.2□□□□□ -1.58
CCDC3Q9BQI4 AC084757.2-201ENST00000559165 540 ntTSL 2 BASIC5.2□□□□□ -1.58
CCDC3Q9BQI4 AC046158.2-201ENST00000568764 707 ntTSL 3 BASIC5.2□□□□□ -1.58
CCDC3Q9BQI4 AC090617.5-201ENST00000571815 528 ntTSL 3 BASIC5.2□□□□□ -1.58
CCDC3Q9BQI4 AL360012.1-201ENST00000602813 131 ntBASIC5.2□□□□□ -1.58
CCDC3Q9BQI4 AC015712.7-201ENST00000615211 635 ntBASIC5.2□□□□□ -1.58
CCDC3Q9BQI4 AC006213.5-201ENST00000619673 288 ntBASIC5.2□□□□□ -1.58
CCDC3Q9BQI4 AC005618.4-201ENST00000625053 554 ntBASIC5.2□□□□□ -1.58
CCDC3Q9BQI4 NEK3-211ENST00000629912 141 ntTSL 5 BASIC5.2□□□□□ -1.58
CCDC3Q9BQI4 GVQW2-203ENST00000641401 327 ntAPPRIS P1 BASIC5.2□□□□□ -1.58
CCDC3Q9BQI4 AL353796.1-201ENST00000561542 3241 ntBASIC5.2□□□□□ -1.58
CCDC3Q9BQI4 AC004784.1-201ENST00000635495 1833 ntTSL 5 BASIC5.2□□□□□ -1.58
CCDC3Q9BQI4 CASC19-281ENST00000642118 1554 ntBASIC5.2□□□□□ -1.58
CCDC3Q9BQI4 AC009962.1-201ENST00000567327 3813 ntBASIC5.2□□□□□ -1.58
CCDC3Q9BQI4 KYAT3-203ENST00000370491 1868 ntAPPRIS ALT1 TSL 2 BASIC5.2□□□□□ -1.58
CCDC3Q9BQI4 GHR-207ENST00000537449 4419 ntAPPRIS P1 TSL 5 BASIC5.2□□□□□ -1.58
CCDC3Q9BQI4 MAP9-208ENST00000515654 2044 ntTSL 5 BASIC5.19□□□□□ -1.58
CCDC3Q9BQI4 LINC02060-201ENST00000506041 1626 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
CCDC3Q9BQI4 KDM4C-214ENST00000536108 3406 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
CCDC3Q9BQI4 OR2T7-202ENST00000641557 3409 ntAPPRIS P1 BASIC5.19□□□□□ -1.58
CCDC3Q9BQI4 ALKBH3-AS1-201ENST00000499194 1906 ntTSL 2 BASIC5.19□□□□□ -1.58
CCDC3Q9BQI4 OR8K1-201ENST00000279783 1087 ntAPPRIS P1 BASIC5.19□□□□□ -1.58
CCDC3Q9BQI4 MTHFD2P5-201ENST00000320415 844 ntBASIC5.19□□□□□ -1.58
CCDC3Q9BQI4 RN7SKP115-201ENST00000363177 317 ntBASIC5.19□□□□□ -1.58
CCDC3Q9BQI4 RNU4-4P-201ENST00000364588 130 ntBASIC5.19□□□□□ -1.58
CCDC3Q9BQI4 RGS10-201ENST00000369101 738 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
CCDC3Q9BQI4 USMG5-203ENST00000369811 635 ntAPPRIS P1 TSL 2 BASIC5.19□□□□□ -1.58
CCDC3Q9BQI4 MIR105-1-201ENST00000385222 81 ntBASIC5.19□□□□□ -1.58
CCDC3Q9BQI4 TRAJ35-201ENST00000390502 59 ntAPPRIS P1 BASIC5.19□□□□□ -1.58
CCDC3Q9BQI4 AL109941.1-201ENST00000401925 229 ntBASIC5.19□□□□□ -1.58
CCDC3Q9BQI4 LINC00342-201ENST00000412393 654 ntTSL 3 BASIC5.19□□□□□ -1.58
CCDC3Q9BQI4 MGAT2P2-201ENST00000427194 797 ntBASIC5.19□□□□□ -1.58
CCDC3Q9BQI4 SDCBP-205ENST00000447267 772 ntTSL 3 BASIC5.19□□□□□ -1.58
CCDC3Q9BQI4 BX546450.1-201ENST00000454307 482 ntTSL 2 BASIC5.19□□□□□ -1.58
CCDC3Q9BQI4 LINC01436-201ENST00000457157 1048 ntTSL 2 BASIC5.19□□□□□ -1.58
CCDC3Q9BQI4 AC089999.1-201ENST00000460336 374 ntBASIC5.19□□□□□ -1.58
CCDC3Q9BQI4 AC092754.1-201ENST00000472975 479 ntBASIC5.19□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 140.8 ms