Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 POU5F1P7-201ENST00000508759 541 ntBASIC6.89□□□□□ -1.31
MSX1P28360 AC022296.2-201ENST00000512424 202 ntBASIC6.89□□□□□ -1.31
MSX1P28360 VPS37A-208ENST00000521005 479 ntTSL 3 BASIC6.89□□□□□ -1.31
MSX1P28360 SNX18P27-201ENST00000523611 779 ntBASIC6.89□□□□□ -1.31
MSX1P28360 RGS4-207ENST00000527809 817 ntTSL 4 BASIC6.89□□□□□ -1.31
MSX1P28360 AP002336.1-201ENST00000531426 422 ntTSL 2 BASIC6.89□□□□□ -1.31
MSX1P28360 SMCO2-203ENST00000535986 1096 ntAPPRIS P2 TSL 5 BASIC6.89□□□□□ -1.31
MSX1P28360 AC079907.2-202ENST00000547004 423 ntTSL 2 BASIC6.89□□□□□ -1.31
MSX1P28360 AC027287.2-201ENST00000547559 592 ntTSL 4 BASIC6.89□□□□□ -1.31
MSX1P28360 ORMDL2-203ENST00000548974 671 ntAPPRIS P1 TSL 2 BASIC6.89□□□□□ -1.31
MSX1P28360 AC023310.2-201ENST00000553844 547 ntBASIC6.89□□□□□ -1.31
MSX1P28360 COX6CP11-201ENST00000555293 229 ntBASIC6.89□□□□□ -1.31
MSX1P28360 LINC01579-205ENST00000556447 791 ntTSL 4 BASIC6.89□□□□□ -1.31
MSX1P28360 AC055876.1-202ENST00000567053 138 ntBASIC6.89□□□□□ -1.31
MSX1P28360 hsa-mir-3119-1.1-201ENST00000577602 85 ntBASIC6.89□□□□□ -1.31
MSX1P28360 RPS4XP16-202ENST00000595905 807 ntTSL 5 BASIC6.89□□□□□ -1.31
MSX1P28360 ZEB2-AS1-206ENST00000602006 572 ntTSL 5 BASIC6.89□□□□□ -1.31
MSX1P28360 RPS28P1-201ENST00000604589 187 ntBASIC6.89□□□□□ -1.31
MSX1P28360 AC113361.1-201ENST00000606683 543 ntBASIC6.89□□□□□ -1.31
MSX1P28360 AC097468.3-201ENST00000607956 456 ntBASIC6.89□□□□□ -1.31
MSX1P28360 SNORD91A-202ENST00000609620 191 ntBASIC6.89□□□□□ -1.31
MSX1P28360 FAM27E3-202ENST00000614611 340 ntBASIC6.89□□□□□ -1.31
MSX1P28360 CCL23-203ENST00000615050 624 ntAPPRIS P3 TSL 1 (best) BASIC6.89□□□□□ -1.31
MSX1P28360 LINC01378-205ENST00000615833 158 ntTSL 5 BASIC6.89□□□□□ -1.31
MSX1P28360 AC092683.2-201ENST00000619740 621 ntTSL 3 BASIC6.89□□□□□ -1.31
MSX1P28360 AP006248.2-201ENST00000623309 592 ntBASIC6.89□□□□□ -1.31
MSX1P28360 AC129908.1-201ENST00000624553 648 ntBASIC6.89□□□□□ -1.31
MSX1P28360 PTP4A1-206ENST00000627002 447 ntTSL 5 BASIC6.89□□□□□ -1.31
MSX1P28360 ITGA9-AS1-218ENST00000630762 751 ntTSL 5 BASIC6.89□□□□□ -1.31
MSX1P28360 AC138649.5-201ENST00000637456 137 ntBASIC6.89□□□□□ -1.31
MSX1P28360 AC011346.1-204ENST00000638089 1210 ntAPPRIS P5 TSL 3 BASIC6.89□□□□□ -1.31
MSX1P28360 MTHFD2L-207ENST00000433372 1407 ntTSL 1 (best) BASIC6.89□□□□□ -1.31
MSX1P28360 SORBS1-205ENST00000371227 7279 ntAPPRIS ALT2 TSL 1 (best) BASIC6.89□□□□□ -1.31
MSX1P28360 ZMYM6-203ENST00000373333 1473 ntTSL 1 (best) BASIC6.89□□□□□ -1.31
MSX1P28360 AL356361.1-201ENST00000400943 1459 ntBASIC6.89□□□□□ -1.31
MSX1P28360 AC007823.1-201ENST00000569932 1566 ntBASIC6.89□□□□□ -1.31
MSX1P28360 SYNE2-216ENST00000555002 11532 ntTSL 1 (best) BASIC6.89□□□□□ -1.31
MSX1P28360 C12orf50-201ENST00000298699 1722 ntAPPRIS P1 TSL 2 BASIC6.89□□□□□ -1.31
MSX1P28360 LINC01362-202ENST00000452901 1712 ntTSL 1 (best) BASIC6.89□□□□□ -1.31
MSX1P28360 CSMD2-210ENST00000619121 13430 ntAPPRIS ALT2 TSL 5 BASIC6.89□□□□□ -1.31
MSX1P28360 CRISPLD1-202ENST00000517786 1964 ntTSL 2 BASIC6.89□□□□□ -1.31
MSX1P28360 PCDH15-213ENST00000395445 5917 ntTSL 1 (best) BASIC6.89□□□□□ -1.31
MSX1P28360 NPL-212ENST00000614468 2376 ntTSL 5 BASIC6.89□□□□□ -1.31
MSX1P28360 ZNF568-215ENST00000617745 2441 ntTSL 5 BASIC6.89□□□□□ -1.31
MSX1P28360 AC006378.2-201ENST00000623178 2476 ntBASIC6.89□□□□□ -1.31
MSX1P28360 TRRAP-201ENST00000355540 12590 ntAPPRIS P3 TSL 1 (best) BASIC6.89□□□□□ -1.31
MSX1P28360 PBLD-204ENST00000358769 2587 ntAPPRIS P1 TSL 5 BASIC6.89□□□□□ -1.31
MSX1P28360 HKR1-201ENST00000324411 2929 ntAPPRIS P3 TSL 1 (best) BASIC6.89□□□□□ -1.31
MSX1P28360 KCNA2-208ENST00000638616 3279 ntAPPRIS P1 TSL 5 BASIC6.89□□□□□ -1.31
MSX1P28360 ZNF674-207ENST00000523374 4073 ntAPPRIS P3 TSL 1 (best) BASIC6.89□□□□□ -1.31
MSX1P28360 SLFN13-209ENST00000533791 4121 ntAPPRIS P1 TSL 2 BASIC6.89□□□□□ -1.31
MSX1P28360 NFATC3-202ENST00000346183 6040 ntAPPRIS P1 TSL 1 (best) BASIC6.89□□□□□ -1.31
MSX1P28360 LIN7A-204ENST00000552864 6112 ntAPPRIS P1 TSL 1 (best) BASIC6.88□□□□□ -1.31
MSX1P28360 A2ML1-201ENST00000299698 5274 ntAPPRIS P1 TSL 1 (best) BASIC6.88□□□□□ -1.31
MSX1P28360 NUP155-207ENST00000513532 4088 ntTSL 1 (best) BASIC6.88□□□□□ -1.31
MSX1P28360 CYFIP2-201ENST00000435847 3673 ntTSL 2 BASIC6.88□□□□□ -1.31
MSX1P28360 LMO3-208ENST00000441439 3515 ntAPPRIS P1 TSL 1 (best) BASIC6.88□□□□□ -1.31
MSX1P28360 HKR1-223ENST00000591471 3472 ntTSL 2 BASIC6.88□□□□□ -1.31
MSX1P28360 SCG3-201ENST00000220478 3315 ntAPPRIS P1 TSL 1 (best) BASIC6.88□□□□□ -1.31
MSX1P28360 ARPP21-221ENST00000444190 3182 ntTSL 1 (best) BASIC6.88□□□□□ -1.31
MSX1P28360 SORBS1-209ENST00000371245 2779 ntAPPRIS ALT2 TSL 1 (best) BASIC6.88□□□□□ -1.31
MSX1P28360 TNFSF15-201ENST00000374044 2789 ntBASIC6.88□□□□□ -1.31
MSX1P28360 CPNE4-208ENST00000511604 2503 ntAPPRIS P1 TSL 1 (best) BASIC6.88□□□□□ -1.31
MSX1P28360 FAM13A-AS1-202ENST00000511543 2453 ntTSL 2 BASIC6.88□□□□□ -1.31
MSX1P28360 PHTF2-207ENST00000424760 1977 ntTSL 2 BASIC6.88□□□□□ -1.31
MSX1P28360 HEATR9-207ENST00000604834 1974 ntAPPRIS P3 TSL 1 (best) BASIC6.88□□□□□ -1.31
MSX1P28360 LINC01653-201ENST00000456026 1728 ntTSL 1 (best) BASIC6.88□□□□□ -1.31
MSX1P28360 CENPN-205ENST00000439957 1699 ntTSL 2 BASIC6.88□□□□□ -1.31
MSX1P28360 ZNF610-208ENST00000613461 1643 ntAPPRIS ALT2 TSL 1 (best) BASIC6.88□□□□□ -1.31
MSX1P28360 IL1RAP-201ENST00000072516 4697 ntAPPRIS P1 TSL 1 (best) BASIC6.88□□□□□ -1.31
MSX1P28360 ECT2-206ENST00000417960 4363 ntAPPRIS ALT1 TSL 1 (best) BASIC6.88□□□□□ -1.31
MSX1P28360 RAB14-201ENST00000373840 4145 ntAPPRIS P1 TSL 1 (best) BASIC6.88□□□□□ -1.31
MSX1P28360 AL357556.1-201ENST00000421884 1388 ntBASIC6.88□□□□□ -1.31
MSX1P28360 DRP2-204ENST00000538510 6852 ntAPPRIS P3 TSL 2 BASIC6.88□□□□□ -1.31
MSX1P28360 CASC19-221ENST00000641309 1382 ntBASIC6.88□□□□□ -1.31
MSX1P28360 ZNF484-204ENST00000395506 4031 ntTSL 3 BASIC6.88□□□□□ -1.31
MSX1P28360 ERC1-204ENST00000397203 9118 ntTSL 5 BASIC6.88□□□□□ -1.31
MSX1P28360 APOOL-202ENST00000613473 6445 ntAPPRIS ALT1 TSL 5 BASIC6.88□□□□□ -1.31
MSX1P28360 OR52D1-201ENST00000322641 1065 ntAPPRIS P1 BASIC6.88□□□□□ -1.31
MSX1P28360 Y_RNA.25-201ENST00000362528 102 ntBASIC6.88□□□□□ -1.31
MSX1P28360 RNU6-582P-201ENST00000362989 107 ntBASIC6.88□□□□□ -1.31
MSX1P28360 Y_RNA.146-201ENST00000363549 102 ntBASIC6.88□□□□□ -1.31
MSX1P28360 RNU1-122P-201ENST00000365538 156 ntBASIC6.88□□□□□ -1.31
MSX1P28360 Y_RNA.384-201ENST00000383909 102 ntBASIC6.88□□□□□ -1.31
MSX1P28360 MIR498-201ENST00000385134 124 ntBASIC6.88□□□□□ -1.31
MSX1P28360 MT-TP-201ENST00000387461 68 ntBASIC6.88□□□□□ -1.31
MSX1P28360 RPL34-202ENST00000394667 441 ntAPPRIS P1 TSL 1 (best) BASIC6.88□□□□□ -1.31
MSX1P28360 SNORA2C-201ENST00000408564 137 ntBASIC6.88□□□□□ -1.31
MSX1P28360 RN7SKP232-201ENST00000410170 290 ntBASIC6.88□□□□□ -1.31
MSX1P28360 RN7SKP58-201ENST00000411010 305 ntBASIC6.88□□□□□ -1.31
MSX1P28360 PPIL1P1-201ENST00000423936 499 ntBASIC6.88□□□□□ -1.31
MSX1P28360 AC003084.1-201ENST00000427030 435 ntTSL 5 BASIC6.88□□□□□ -1.31
MSX1P28360 AC104463.2-201ENST00000428573 314 ntTSL 5 BASIC6.88□□□□□ -1.31
MSX1P28360 AL354983.1-201ENST00000434580 906 ntBASIC6.88□□□□□ -1.31
MSX1P28360 AC239800.1-201ENST00000442049 719 ntBASIC6.88□□□□□ -1.31
MSX1P28360 RPL26P30-201ENST00000453533 435 ntBASIC6.88□□□□□ -1.31
MSX1P28360 TBL1XR1-AS1-201ENST00000454723 414 ntTSL 5 BASIC6.88□□□□□ -1.31
MSX1P28360 AL450345.1-201ENST00000456118 311 ntTSL 3 BASIC6.88□□□□□ -1.31
MSX1P28360 TAAR3P-201ENST00000466706 1078 ntBASIC6.88□□□□□ -1.31
MSX1P28360 TAAR3P-202ENST00000481759 1025 ntBASIC6.88□□□□□ -1.31
Retrieved 100 of 98,524 protein–RNA pairs in 87.2 ms