Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 MAST4-IT1-201ENST00000514241 658 ntBASIC5.35□□□□□ -1.55
HOXA3O43365 AC112242.1-201ENST00000515805 406 ntTSL 3 BASIC5.35□□□□□ -1.55
HOXA3O43365 CDC42P3-201ENST00000518493 633 ntBASIC5.35□□□□□ -1.55
HOXA3O43365 TPT1-AS1-206ENST00000519454 709 ntTSL 5 BASIC5.35□□□□□ -1.55
HOXA3O43365 CHCHD7-210ENST00000521524 703 ntTSL 5 BASIC5.35□□□□□ -1.55
HOXA3O43365 CDKL3-207ENST00000521755 586 ntTSL 5 BASIC5.35□□□□□ -1.55
HOXA3O43365 CA1-215ENST00000522389 551 ntTSL 3 BASIC5.35□□□□□ -1.55
HOXA3O43365 AC135983.3-201ENST00000528049 1226 ntBASIC5.35□□□□□ -1.55
HOXA3O43365 LINC02384-206ENST00000541707 904 ntTSL 3 BASIC5.35□□□□□ -1.55
HOXA3O43365 AC008083.2-201ENST00000546707 476 ntBASIC5.35□□□□□ -1.55
HOXA3O43365 AC069228.1-202ENST00000550272 737 ntTSL 3 BASIC5.35□□□□□ -1.55
HOXA3O43365 RPL3P13-201ENST00000550415 216 ntBASIC5.35□□□□□ -1.55
HOXA3O43365 NR2F2-AS1-208ENST00000560395 441 ntTSL 5 BASIC5.35□□□□□ -1.55
HOXA3O43365 SYPL1P2-201ENST00000582878 727 ntBASIC5.35□□□□□ -1.55
HOXA3O43365 TTN-AS1-213ENST00000584485 838 ntTSL 3 BASIC5.35□□□□□ -1.55
HOXA3O43365 AC093765.1-201ENST00000603758 881 ntBASIC5.35□□□□□ -1.55
HOXA3O43365 CYCSP1-201ENST00000604815 315 ntBASIC5.35□□□□□ -1.55
HOXA3O43365 AC016747.2-201ENST00000605902 364 ntTSL 2 BASIC5.35□□□□□ -1.55
HOXA3O43365 LINC00635-219ENST00000608506 482 ntTSL 5 BASIC5.35□□□□□ -1.55
HOXA3O43365 AC108747.1-201ENST00000609508 535 ntBASIC5.35□□□□□ -1.55
HOXA3O43365 AL121873.1-201ENST00000616013 524 ntBASIC5.35□□□□□ -1.55
HOXA3O43365 MIR6071-201ENST00000616741 78 ntBASIC5.35□□□□□ -1.55
HOXA3O43365 MIR6778-201ENST00000617912 73 ntBASIC5.35□□□□□ -1.55
HOXA3O43365 Metazoa_SRP.179-201ENST00000619020 241 ntBASIC5.35□□□□□ -1.55
HOXA3O43365 AC245452.5-201ENST00000620649 780 ntTSL 3 BASIC5.35□□□□□ -1.55
HOXA3O43365 AL122023.1-201ENST00000622847 530 ntBASIC5.35□□□□□ -1.55
HOXA3O43365 AC135068.5-201ENST00000624197 983 ntBASIC5.35□□□□□ -1.55
HOXA3O43365 AC114546.4-201ENST00000624413 369 ntBASIC5.35□□□□□ -1.55
HOXA3O43365 LINC01435-220ENST00000630847 714 ntTSL 5 BASIC5.35□□□□□ -1.55
HOXA3O43365 AC087565.3-203ENST00000641018 837 ntBASIC5.35□□□□□ -1.55
HOXA3O43365 NXF4-201ENST00000360035 3617 ntTSL 2 BASIC5.35□□□□□ -1.55
HOXA3O43365 MAPK10-383ENST00000642032 3390 ntBASIC5.35□□□□□ -1.55
HOXA3O43365 ELOVL6-202ENST00000394607 6454 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
HOXA3O43365 DLG2-207ENST00000398309 7890 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
HOXA3O43365 AC006213.6-201ENST00000623722 4179 ntBASIC5.35□□□□□ -1.55
HOXA3O43365 FIGN-201ENST00000333129 9536 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
HOXA3O43365 AADAT-202ENST00000353187 2101 ntAPPRIS P3 TSL 2 BASIC5.35□□□□□ -1.55
HOXA3O43365 OR52B5P-204ENST00000641744 3467 ntBASIC5.35□□□□□ -1.55
HOXA3O43365 GPATCH2L-201ENST00000261530 14007 ntTSL 2 BASIC5.35□□□□□ -1.55
HOXA3O43365 RBPJ-202ENST00000342320 5761 ntAPPRIS P3 TSL 1 (best) BASIC5.35□□□□□ -1.55
HOXA3O43365 NEK11-207ENST00000508196 1938 ntAPPRIS P3 TSL 2 BASIC5.35□□□□□ -1.55
HOXA3O43365 TCP11X2-202ENST00000453326 1747 ntAPPRIS P1 TSL 2 BASIC5.34□□□□□ -1.55
HOXA3O43365 TCP11X1-201ENST00000597070 1747 ntTSL 2 BASIC5.34□□□□□ -1.55
HOXA3O43365 MRRFP1-201ENST00000435941 1675 ntBASIC5.34□□□□□ -1.55
HOXA3O43365 LYSMD3-203ENST00000500869 3863 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
HOXA3O43365 PUM2-201ENST00000319801 6002 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
HOXA3O43365 CTNNA1-244ENST00000627109 3831 ntTSL 5 BASIC5.34□□□□□ -1.55
HOXA3O43365 PMFBP1-202ENST00000355636 3501 ntAPPRIS ALT2 TSL 5 BASIC5.34□□□□□ -1.55
HOXA3O43365 GTDC1-204ENST00000392869 10514 ntAPPRIS P1 TSL 5 BASIC5.34□□□□□ -1.55
HOXA3O43365 RRH-201ENST00000317735 1455 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
HOXA3O43365 EIF4ENIF1-205ENST00000397523 3420 ntTSL 5 BASIC5.34□□□□□ -1.55
HOXA3O43365 ZNF24-201ENST00000261332 6307 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
HOXA3O43365 DNM1P47-203ENST00000571780 12667 ntBASIC5.34□□□□□ -1.55
HOXA3O43365 PARP4P1-201ENST00000435945 2337 ntBASIC5.34□□□□□ -1.55
HOXA3O43365 AC003973.2-201ENST00000596778 1394 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
HOXA3O43365 CPNE3-203ENST00000517490 4865 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
HOXA3O43365 ERAP2-202ENST00000437043 5705 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
HOXA3O43365 PLCB4-202ENST00000378473 5619 ntAPPRIS ALT1 TSL 1 (best) BASIC5.34□□□□□ -1.55
HOXA3O43365 DEFB129-201ENST00000246105 698 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
HOXA3O43365 MRPS36-201ENST00000256441 1286 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
HOXA3O43365 SPATA9-201ENST00000274432 1100 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
HOXA3O43365 CCR8-201ENST00000326306 1253 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
HOXA3O43365 RNA5SP65-201ENST00000363166 119 ntBASIC5.34□□□□□ -1.55
HOXA3O43365 RNA5SP279-201ENST00000365513 117 ntBASIC5.34□□□□□ -1.55
HOXA3O43365 SLAMF6-201ENST00000368055 730 ntTSL 2 BASIC5.34□□□□□ -1.55
HOXA3O43365 IGLV3-16-201ENST00000390311 385 ntAPPRIS P1 BASIC5.34□□□□□ -1.55
HOXA3O43365 RPL34-203ENST00000394668 853 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
HOXA3O43365 PPP1R7-203ENST00000401987 820 ntTSL 3 BASIC5.34□□□□□ -1.55
HOXA3O43365 BTBD9-203ENST00000403056 1155 ntTSL 5 BASIC5.34□□□□□ -1.55
HOXA3O43365 RNA5SP115-201ENST00000411160 107 ntBASIC5.34□□□□□ -1.55
HOXA3O43365 AL359962.1-201ENST00000417969 303 ntTSL 5 BASIC5.34□□□□□ -1.55
HOXA3O43365 GRK5-IT1-201ENST00000421206 400 ntTSL 3 BASIC5.34□□□□□ -1.55
HOXA3O43365 PLA2G12AP2-201ENST00000424744 264 ntBASIC5.34□□□□□ -1.55
HOXA3O43365 AL009174.1-201ENST00000426577 416 ntBASIC5.34□□□□□ -1.55
HOXA3O43365 MYCBP2-AS2-201ENST00000428716 428 ntTSL 5 BASIC5.34□□□□□ -1.55
HOXA3O43365 AL162408.1-201ENST00000428853 433 ntTSL 5 BASIC5.34□□□□□ -1.55
HOXA3O43365 OR2B8P-201ENST00000432841 938 ntBASIC5.34□□□□□ -1.55
HOXA3O43365 AL731544.1-201ENST00000436500 370 ntTSL 5 BASIC5.34□□□□□ -1.55
HOXA3O43365 MTND2P20-201ENST00000440805 661 ntBASIC5.34□□□□□ -1.55
HOXA3O43365 TRIM60P18-201ENST00000441518 828 ntBASIC5.34□□□□□ -1.55
HOXA3O43365 AL161937.1-201ENST00000444478 425 ntTSL 3 BASIC5.34□□□□□ -1.55
HOXA3O43365 USP9YP29-201ENST00000445112 563 ntBASIC5.34□□□□□ -1.55
HOXA3O43365 DEFA11P-201ENST00000446470 261 ntBASIC5.34□□□□□ -1.55
HOXA3O43365 RPL36AP33-201ENST00000450395 310 ntBASIC5.34□□□□□ -1.55
HOXA3O43365 PNPLA4P1-201ENST00000458328 305 ntBASIC5.34□□□□□ -1.55
HOXA3O43365 AC091826.2-201ENST00000504034 412 ntTSL 3 BASIC5.34□□□□□ -1.55
HOXA3O43365 AC114954.1-201ENST00000506656 820 ntTSL 3 BASIC5.34□□□□□ -1.55
HOXA3O43365 THAP6-209ENST00000507556 1134 ntTSL 2 BASIC5.34□□□□□ -1.55
HOXA3O43365 HMGN1P16-201ENST00000508308 283 ntBASIC5.34□□□□□ -1.55
HOXA3O43365 OR52H2P-201ENST00000514607 902 ntBASIC5.34□□□□□ -1.55
HOXA3O43365 RNU6-1225P-201ENST00000516336 65 ntBASIC5.34□□□□□ -1.55
HOXA3O43365 AC087664.1-201ENST00000521456 358 ntTSL 3 BASIC5.34□□□□□ -1.55
HOXA3O43365 OR52K3P-201ENST00000531655 943 ntBASIC5.34□□□□□ -1.55
HOXA3O43365 AC079385.3-201ENST00000552415 809 ntTSL 3 BASIC5.34□□□□□ -1.55
HOXA3O43365 POLR2KP1-201ENST00000553226 168 ntBASIC5.34□□□□□ -1.55
HOXA3O43365 AL137129.1-201ENST00000555937 720 ntTSL 4 BASIC5.34□□□□□ -1.55
HOXA3O43365 AC245505.1-201ENST00000556398 224 ntBASIC5.34□□□□□ -1.55
HOXA3O43365 AC013652.2-202ENST00000558948 910 ntTSL 3 BASIC5.34□□□□□ -1.55
HOXA3O43365 AC091117.2-201ENST00000560324 542 ntTSL 4 BASIC5.34□□□□□ -1.55
HOXA3O43365 AC092140.1-201ENST00000563090 549 ntTSL 3 BASIC5.34□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 105.6 ms