Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 SAMSN1-206ENST00000619120 2028 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
CCDC88AQ3V6T2 LINC02302-201ENST00000556405 2904 ntTSL 2 BASIC6.23□□□□□ -1.41
CCDC88AQ3V6T2 MCM9-209ENST00000619706 4822 ntAPPRIS P1 TSL 5 BASIC6.23□□□□□ -1.41
CCDC88AQ3V6T2 VCAM1-202ENST00000347652 2812 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
CCDC88AQ3V6T2 AC092451.3-201ENST00000625067 1343 ntBASIC6.23□□□□□ -1.41
CCDC88AQ3V6T2 CCDC186-203ENST00000369287 7245 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
CCDC88AQ3V6T2 OR5L2-201ENST00000378397 936 ntAPPRIS P1 BASIC6.23□□□□□ -1.41
CCDC88AQ3V6T2 SNORA70F-201ENST00000384142 135 ntBASIC6.23□□□□□ -1.41
CCDC88AQ3V6T2 NPM1P36-201ENST00000415681 835 ntBASIC6.23□□□□□ -1.41
CCDC88AQ3V6T2 AC096644.1-201ENST00000446169 390 ntTSL 3 BASIC6.23□□□□□ -1.41
CCDC88AQ3V6T2 AL365271.1-201ENST00000448909 603 ntTSL 3 BASIC6.23□□□□□ -1.41
CCDC88AQ3V6T2 MRPS33P2-201ENST00000507850 322 ntBASIC6.23□□□□□ -1.41
CCDC88AQ3V6T2 AC012339.2-201ENST00000523996 453 ntBASIC6.23□□□□□ -1.41
CCDC88AQ3V6T2 LINC02408-202ENST00000538573 559 ntTSL 4 BASIC6.23□□□□□ -1.41
CCDC88AQ3V6T2 BGLT3-201ENST00000564523 994 ntBASIC6.23□□□□□ -1.41
CCDC88AQ3V6T2 AP000919.3-201ENST00000582591 568 ntTSL 3 BASIC6.23□□□□□ -1.41
CCDC88AQ3V6T2 NUP107-202ENST00000378905 2859 ntTSL 5 BASIC6.23□□□□□ -1.41
CCDC88AQ3V6T2 FRK-201ENST00000606080 13230 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
CCDC88AQ3V6T2 ZNF585B-205ENST00000532828 6210 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
CCDC88AQ3V6T2 KLHL13-203ENST00000371878 3234 ntTSL 2 BASIC6.23□□□□□ -1.41
CCDC88AQ3V6T2 AL592148.3-201ENST00000608771 2646 ntBASIC6.23□□□□□ -1.41
CCDC88AQ3V6T2 ADGRL2-222ENST00000627151 5789 ntTSL 5 BASIC6.23□□□□□ -1.41
CCDC88AQ3V6T2 KBTBD8-201ENST00000417314 4680 ntAPPRIS P1 TSL 2 BASIC6.23□□□□□ -1.41
CCDC88AQ3V6T2 IGF2BP2-AS1-202ENST00000456447 1531 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
CCDC88AQ3V6T2 ZNF607-202ENST00000395835 4003 ntAPPRIS ALT2 TSL 2 BASIC6.23□□□□□ -1.41
CCDC88AQ3V6T2 LRIT3-201ENST00000327908 3781 ntTSL 2 BASIC6.22□□□□□ -1.41
CCDC88AQ3V6T2 SRPK2-201ENST00000357311 3700 ntAPPRIS P3 TSL 1 (best) BASIC6.22□□□□□ -1.41
CCDC88AQ3V6T2 GABRA1-215ENST00000636573 2262 ntAPPRIS P1 TSL 5 BASIC6.22□□□□□ -1.41
CCDC88AQ3V6T2 EYA4-206ENST00000431403 2154 ntTSL 5 BASIC6.22□□□□□ -1.41
CCDC88AQ3V6T2 SNX10-203ENST00000409367 746 ntTSL 5 BASIC6.22□□□□□ -1.41
CCDC88AQ3V6T2 AC006037.1-201ENST00000437967 287 ntTSL 5 BASIC6.22□□□□□ -1.41
CCDC88AQ3V6T2 AP000402.1-201ENST00000446404 540 ntTSL 3 BASIC6.22□□□□□ -1.41
CCDC88AQ3V6T2 AL359073.1-201ENST00000448036 403 ntBASIC6.22□□□□□ -1.41
CCDC88AQ3V6T2 RPL23AP56-201ENST00000460778 453 ntBASIC6.22□□□□□ -1.41
CCDC88AQ3V6T2 AC109327.1-201ENST00000471666 403 ntBASIC6.22□□□□□ -1.41
CCDC88AQ3V6T2 AC012400.1-201ENST00000518452 381 ntBASIC6.22□□□□□ -1.41
CCDC88AQ3V6T2 AC026786.2-201ENST00000606110 392 ntTSL 3 BASIC6.22□□□□□ -1.41
CCDC88AQ3V6T2 AC019206.1-201ENST00000621938 425 ntBASIC6.22□□□□□ -1.41
CCDC88AQ3V6T2 MAPK6PS2-201ENST00000379571 2060 ntBASIC6.22□□□□□ -1.41
CCDC88AQ3V6T2 CASC1-204ENST00000395990 2417 ntAPPRIS ALT2 TSL 1 (best) BASIC6.22□□□□□ -1.41
CCDC88AQ3V6T2 MTCO1P15-201ENST00000529569 1526 ntBASIC6.22□□□□□ -1.41
CCDC88AQ3V6T2 SEC31A-217ENST00000505984 3596 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
CCDC88AQ3V6T2 Z98755.1-201ENST00000407015 1384 ntBASIC6.22□□□□□ -1.41
CCDC88AQ3V6T2 ZNF652P1-201ENST00000442420 1309 ntBASIC6.22□□□□□ -1.41
CCDC88AQ3V6T2 RBM28-201ENST00000223073 15507 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
CCDC88AQ3V6T2 R3HCC1L-204ENST00000370586 941 ntTSL 3 BASIC6.22□□□□□ -1.41
CCDC88AQ3V6T2 RPL17P50-201ENST00000396131 546 ntBASIC6.22□□□□□ -1.41
CCDC88AQ3V6T2 AP000943.1-201ENST00000438416 712 ntTSL 3 BASIC6.22□□□□□ -1.41
CCDC88AQ3V6T2 AL356390.1-201ENST00000455684 397 ntBASIC6.22□□□□□ -1.41
CCDC88AQ3V6T2 AC010350.1-201ENST00000504908 231 ntBASIC6.22□□□□□ -1.41
CCDC88AQ3V6T2 RN7SKP260-201ENST00000516907 149 ntBASIC6.22□□□□□ -1.41
CCDC88AQ3V6T2 AC002428.2-201ENST00000522973 414 ntTSL 3 BASIC6.22□□□□□ -1.41
CCDC88AQ3V6T2 AP003080.1-202ENST00000526526 915 ntBASIC6.22□□□□□ -1.41
CCDC88AQ3V6T2 AC110275.1-201ENST00000534420 623 ntAPPRIS P1 TSL 4 BASIC6.22□□□□□ -1.41
CCDC88AQ3V6T2 AC022523.3-201ENST00000559643 410 ntTSL 3 BASIC6.22□□□□□ -1.41
CCDC88AQ3V6T2 AC105254.2-201ENST00000603636 436 ntBASIC6.22□□□□□ -1.41
CCDC88AQ3V6T2 CCL14-203ENST00000620991 426 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
CCDC88AQ3V6T2 MTAP-210ENST00000580900 7557 ntTSL 1 (best) BASIC6.21□□□□□ -1.41
CCDC88AQ3V6T2 GPHN-204ENST00000543237 2459 ntTSL 2 BASIC6.21□□□□□ -1.41
CCDC88AQ3V6T2 DNAJB4-201ENST00000370763 2988 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.41
CCDC88AQ3V6T2 GSTM2-206ENST00000442650 1478 ntTSL 5 BASIC6.21□□□□□ -1.41
CCDC88AQ3V6T2 AC009975.2-201ENST00000635306 1429 ntTSL 5 BASIC6.21□□□□□ -1.42
CCDC88AQ3V6T2 UPF2-203ENST00000397053 5369 ntAPPRIS P1 TSL 5 BASIC6.21□□□□□ -1.42
CCDC88AQ3V6T2 MECOM-203ENST00000460814 3374 ntTSL 1 (best) BASIC6.21□□□□□ -1.42
CCDC88AQ3V6T2 CYBB-201ENST00000378588 4324 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.42
CCDC88AQ3V6T2 U2SURP-214ENST00000493598 3491 ntTSL 5 BASIC6.21□□□□□ -1.42
CCDC88AQ3V6T2 SLC15A2-201ENST00000295605 2379 ntTSL 2 BASIC6.21□□□□□ -1.42
CCDC88AQ3V6T2 PTPRT-201ENST00000356100 12480 ntAPPRIS ALT2 TSL 5 BASIC6.21□□□□□ -1.42
CCDC88AQ3V6T2 PTPRT-202ENST00000373184 12483 ntAPPRIS ALT2 TSL 5 BASIC6.21□□□□□ -1.42
CCDC88AQ3V6T2 PTPRT-203ENST00000373187 12453 ntAPPRIS P3 TSL 1 (best) BASIC6.21□□□□□ -1.42
CCDC88AQ3V6T2 C1orf54-201ENST00000369098 418 ntTSL 1 (best) BASIC6.21□□□□□ -1.42
CCDC88AQ3V6T2 RPS21P8-201ENST00000413365 247 ntBASIC6.21□□□□□ -1.42
CCDC88AQ3V6T2 AL389915.1-201ENST00000422463 466 ntBASIC6.21□□□□□ -1.42
CCDC88AQ3V6T2 OR2B7P-201ENST00000429302 934 ntBASIC6.21□□□□□ -1.42
CCDC88AQ3V6T2 SPATA13-AS1-201ENST00000430733 433 ntTSL 3 BASIC6.21□□□□□ -1.42
CCDC88AQ3V6T2 BX323845.1-201ENST00000432417 179 ntBASIC6.21□□□□□ -1.42
CCDC88AQ3V6T2 CCNB1IP1P2-201ENST00000432876 818 ntBASIC6.21□□□□□ -1.42
CCDC88AQ3V6T2 RPL7AP61-201ENST00000443410 636 ntBASIC6.21□□□□□ -1.42
CCDC88AQ3V6T2 AC011276.1-201ENST00000469688 323 ntBASIC6.21□□□□□ -1.42
CCDC88AQ3V6T2 RNA5SP392-201ENST00000516905 112 ntBASIC6.21□□□□□ -1.42
CCDC88AQ3V6T2 NSMCE2-206ENST00000519010 848 ntTSL 2 BASIC6.21□□□□□ -1.42
CCDC88AQ3V6T2 CARD8-211ENST00000519332 500 ntTSL 1 (best) BASIC6.21□□□□□ -1.42
CCDC88AQ3V6T2 BNIP3P35-201ENST00000604530 490 ntBASIC6.21□□□□□ -1.42
CCDC88AQ3V6T2 AL445423.1-201ENST00000609941 536 ntBASIC6.21□□□□□ -1.42
CCDC88AQ3V6T2 C7orf77-201ENST00000616258 548 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.42
CCDC88AQ3V6T2 AC006210.2-201ENST00000367074 1545 ntBASIC6.21□□□□□ -1.42
CCDC88AQ3V6T2 RPL7-204ENST00000396467 1526 ntTSL 3 BASIC6.21□□□□□ -1.42
CCDC88AQ3V6T2 ZCCHC6-201ENST00000277141 5724 ntTSL 2 BASIC6.21□□□□□ -1.42
CCDC88AQ3V6T2 CPNE4-214ENST00000617767 3556 ntTSL 2 BASIC6.21□□□□□ -1.42
CCDC88AQ3V6T2 ZNF521-201ENST00000361524 4871 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
CCDC88AQ3V6T2 NPSR1-AS1-202ENST00000419766 4821 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
CCDC88AQ3V6T2 MAMDC2-AS1-201ENST00000377178 1504 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
CCDC88AQ3V6T2 ZFHX3-207ENST00000641206 16414 ntAPPRIS P1 BASIC6.2□□□□□ -1.42
CCDC88AQ3V6T2 ZNF506-201ENST00000443905 4095 ntAPPRIS P3 TSL 2 BASIC6.2□□□□□ -1.42
CCDC88AQ3V6T2 APOA2-201ENST00000367990 474 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
CCDC88AQ3V6T2 AC002064.2-201ENST00000420245 289 ntTSL 3 BASIC6.2□□□□□ -1.42
CCDC88AQ3V6T2 CENPIP1-201ENST00000425713 902 ntBASIC6.2□□□□□ -1.42
CCDC88AQ3V6T2 RPL7AP49-201ENST00000429522 581 ntBASIC6.2□□□□□ -1.42
CCDC88AQ3V6T2 NRBF2P3-201ENST00000432731 865 ntBASIC6.2□□□□□ -1.42
CCDC88AQ3V6T2 AL591438.1-201ENST00000433508 581 ntBASIC6.2□□□□□ -1.42
Retrieved 100 of 98,524 protein–RNA pairs in 101.4 ms