Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 PFKFB2-201ENST00000367079 3494 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
VMP1Q96GC9 AL138828.1-203ENST00000419926 1570 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
VMP1Q96GC9 SDR42E1-201ENST00000328945 11566 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
VMP1Q96GC9 RANBP3L-201ENST00000296604 3104 ntAPPRIS P3 TSL 1 (best) BASIC5.45□□□□□ -1.54
VMP1Q96GC9 AC018809.2-201ENST00000602436 3823 ntBASIC5.45□□□□□ -1.54
VMP1Q96GC9 NCOA7-202ENST00000368357 5521 ntAPPRIS P3 TSL 1 (best) BASIC5.45□□□□□ -1.54
VMP1Q96GC9 RWDD2A-201ENST00000369724 3744 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
VMP1Q96GC9 LINC01187-201ENST00000506431 2314 ntTSL 5 BASIC5.45□□□□□ -1.54
VMP1Q96GC9 GRIA4-204ENST00000428631 2778 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
VMP1Q96GC9 TMEM30A-202ENST00000370050 3775 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
VMP1Q96GC9 SCN1A-201ENST00000303395 8533 ntAPPRIS ALT1 TSL 5 BASIC5.44□□□□□ -1.54
VMP1Q96GC9 MAPK10-304ENST00000641341 3984 ntBASIC5.44□□□□□ -1.54
VMP1Q96GC9 RPL7-204ENST00000396467 1526 ntTSL 3 BASIC5.44□□□□□ -1.54
VMP1Q96GC9 SENP8-202ENST00000542035 1672 ntAPPRIS P1 TSL 2 BASIC5.44□□□□□ -1.54
VMP1Q96GC9 TLR8-201ENST00000218032 4216 ntAPPRIS ALT2 TSL 1 (best) BASIC5.44□□□□□ -1.54
VMP1Q96GC9 STEAP2-203ENST00000394622 6612 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
VMP1Q96GC9 RBMY1F-201ENST00000303766 1887 ntAPPRIS P5 TSL 1 (best) BASIC5.44□□□□□ -1.54
VMP1Q96GC9 MIR375-201ENST00000362103 64 ntBASIC5.44□□□□□ -1.54
VMP1Q96GC9 KYAT3-203ENST00000370491 1868 ntAPPRIS ALT1 TSL 2 BASIC5.44□□□□□ -1.54
VMP1Q96GC9 GKN1-201ENST00000377938 814 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
VMP1Q96GC9 PRH2-201ENST00000381847 641 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
VMP1Q96GC9 RPS12P17-201ENST00000438591 377 ntBASIC5.44□□□□□ -1.54
VMP1Q96GC9 AC092013.1-201ENST00000438795 332 ntBASIC5.44□□□□□ -1.54
VMP1Q96GC9 MLIP-IT1-201ENST00000441845 643 ntTSL 2 BASIC5.44□□□□□ -1.54
VMP1Q96GC9 AL353804.1-201ENST00000444482 451 ntTSL 5 BASIC5.44□□□□□ -1.54
VMP1Q96GC9 AC073109.1-201ENST00000445066 978 ntBASIC5.44□□□□□ -1.54
VMP1Q96GC9 AC016724.1-201ENST00000453215 421 ntBASIC5.44□□□□□ -1.54
VMP1Q96GC9 AC005154.1-228ENST00000454922 1405 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
VMP1Q96GC9 AC093166.4-201ENST00000457867 318 ntBASIC5.44□□□□□ -1.54
VMP1Q96GC9 RNU6-1218P-201ENST00000458990 108 ntBASIC5.44□□□□□ -1.54
VMP1Q96GC9 RPSAP37-201ENST00000470913 821 ntBASIC5.44□□□□□ -1.54
VMP1Q96GC9 LINC02339-201ENST00000472649 752 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
VMP1Q96GC9 RPL38P3-201ENST00000484463 213 ntBASIC5.44□□□□□ -1.54
VMP1Q96GC9 NENFP3-201ENST00000503735 313 ntBASIC5.44□□□□□ -1.54
VMP1Q96GC9 AC138866.2-201ENST00000508650 584 ntBASIC5.44□□□□□ -1.54
VMP1Q96GC9 AC139720.1-201ENST00000509497 512 ntTSL 3 BASIC5.44□□□□□ -1.54
VMP1Q96GC9 RNU6-347P-201ENST00000516658 105 ntBASIC5.44□□□□□ -1.54
VMP1Q96GC9 WASHC5-AS1-201ENST00000519140 587 ntTSL 4 BASIC5.44□□□□□ -1.54
VMP1Q96GC9 OR52E8-201ENST00000537935 1061 ntAPPRIS P1 BASIC5.44□□□□□ -1.54
VMP1Q96GC9 AC027130.1-201ENST00000564490 686 ntTSL 2 BASIC5.44□□□□□ -1.54
VMP1Q96GC9 AC009097.1-201ENST00000567077 406 ntTSL 3 BASIC5.44□□□□□ -1.54
VMP1Q96GC9 PINLYP-205ENST00000569031 557 ntTSL 2 BASIC5.44□□□□□ -1.54
VMP1Q96GC9 AL163952.1-202ENST00000569625 600 ntBASIC5.44□□□□□ -1.54
VMP1Q96GC9 AL589935.1-223ENST00000587015 808 ntTSL 5 BASIC5.44□□□□□ -1.54
VMP1Q96GC9 AC027243.2-201ENST00000602530 724 ntBASIC5.44□□□□□ -1.54
VMP1Q96GC9 AC010200.2-201ENST00000605098 235 ntBASIC5.44□□□□□ -1.54
VMP1Q96GC9 AL359715.4-201ENST00000606629 1436 ntBASIC5.44□□□□□ -1.54
VMP1Q96GC9 CCDC195-201ENST00000638102 606 ntAPPRIS P1 TSL 5 BASIC5.44□□□□□ -1.54
VMP1Q96GC9 OR51C1P-202ENST00000641159 1444 ntBASIC5.44□□□□□ -1.54
VMP1Q96GC9 OR11H2-202ENST00000641517 1085 ntBASIC5.44□□□□□ -1.54
VMP1Q96GC9 KLHL4-202ENST00000373119 5818 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
VMP1Q96GC9 RAG2-201ENST00000311485 2388 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
VMP1Q96GC9 TEK-205ENST00000615002 4666 ntTSL 5 BASIC5.44□□□□□ -1.54
VMP1Q96GC9 HACD3-209ENST00000566511 1782 ntTSL 5 BASIC5.44□□□□□ -1.54
VMP1Q96GC9 ATRX-201ENST00000373344 11220 ntAPPRIS P4 TSL 1 (best) BASIC5.44□□□□□ -1.54
VMP1Q96GC9 POPDC3-201ENST00000254765 1345 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
VMP1Q96GC9 ARHGAP21-202ENST00000376410 3526 ntTSL 5 BASIC5.44□□□□□ -1.54
VMP1Q96GC9 RXFP1-203ENST00000343542 2130 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
VMP1Q96GC9 LINC00504-201ENST00000505089 4672 ntTSL 2 BASIC5.44□□□□□ -1.54
VMP1Q96GC9 MYBPC1-209ENST00000547509 3749 ntAPPRIS ALT2 TSL 5 BASIC5.44□□□□□ -1.54
VMP1Q96GC9 SLC12A6-216ENST00000560164 3744 ntTSL 2 BASIC5.44□□□□□ -1.54
VMP1Q96GC9 ZNF410-211ENST00000555044 2601 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
VMP1Q96GC9 ZNF334-203ENST00000593880 2635 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
VMP1Q96GC9 DNA2-201ENST00000358410 4208 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
VMP1Q96GC9 KRR1-201ENST00000229214 10118 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
VMP1Q96GC9 ADAM2-207ENST00000622267 2480 ntAPPRIS ALT2 TSL 2 BASIC5.43□□□□□ -1.54
VMP1Q96GC9 AL022311.1-201ENST00000623726 19416 ntBASIC5.43□□□□□ -1.54
VMP1Q96GC9 IGF2BP2-AS1-202ENST00000456447 1531 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
VMP1Q96GC9 ZNF560-201ENST00000301480 2654 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
VMP1Q96GC9 ECT2L-201ENST00000367682 4343 ntAPPRIS P1 TSL 5 BASIC5.43□□□□□ -1.54
VMP1Q96GC9 ECT2L-203ENST00000423192 4319 ntAPPRIS P1 TSL 5 BASIC5.43□□□□□ -1.54
VMP1Q96GC9 ERCC6L-201ENST00000334463 4243 ntAPPRIS P2 TSL 1 (best) BASIC5.43□□□□□ -1.54
VMP1Q96GC9 SCEL-205ENST00000535157 3096 ntAPPRIS ALT2 TSL 2 BASIC5.43□□□□□ -1.54
VMP1Q96GC9 ROS1-201ENST00000368507 7417 ntAPPRIS ALT2 TSL 5 BASIC5.43□□□□□ -1.54
VMP1Q96GC9 OR14C36-201ENST00000317861 939 ntAPPRIS P1 BASIC5.43□□□□□ -1.54
VMP1Q96GC9 U3.7-201ENST00000363668 216 ntBASIC5.43□□□□□ -1.54
VMP1Q96GC9 KRTAP29-1-201ENST00000391353 1026 ntAPPRIS P1 BASIC5.43□□□□□ -1.54
VMP1Q96GC9 CABYR-204ENST00000399499 1272 ntAPPRIS ALT2 TSL 1 (best) BASIC5.43□□□□□ -1.54
VMP1Q96GC9 TOMM7-203ENST00000405021 455 ntTSL 2 BASIC5.43□□□□□ -1.54
VMP1Q96GC9 RN7SKP29-201ENST00000410957 272 ntBASIC5.43□□□□□ -1.54
VMP1Q96GC9 RNA5SP498-201ENST00000411342 120 ntBASIC5.43□□□□□ -1.54
VMP1Q96GC9 RNU6-603P-201ENST00000411403 107 ntBASIC5.43□□□□□ -1.54
VMP1Q96GC9 AL136368.1-201ENST00000416249 401 ntTSL 2 BASIC5.43□□□□□ -1.54
VMP1Q96GC9 AC019205.1-201ENST00000421830 730 ntBASIC5.43□□□□□ -1.54
VMP1Q96GC9 AC060234.3-201ENST00000430438 559 ntTSL 5 BASIC5.43□□□□□ -1.54
VMP1Q96GC9 AL121759.1-201ENST00000434043 795 ntTSL 5 BASIC5.43□□□□□ -1.54
VMP1Q96GC9 LINC00415-201ENST00000439079 435 ntTSL 3 BASIC5.43□□□□□ -1.54
VMP1Q96GC9 AC023512.1-201ENST00000444513 499 ntBASIC5.43□□□□□ -1.54
VMP1Q96GC9 AL009050.1-201ENST00000445278 426 ntTSL 3 BASIC5.43□□□□□ -1.54
VMP1Q96GC9 RSL24D1P2-201ENST00000445584 366 ntBASIC5.43□□□□□ -1.54
VMP1Q96GC9 AC005772.1-201ENST00000446671 976 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
VMP1Q96GC9 CBX1P2-201ENST00000453841 458 ntBASIC5.43□□□□□ -1.54
VMP1Q96GC9 FRG2FP-204ENST00000453982 852 ntBASIC5.43□□□□□ -1.54
VMP1Q96GC9 RNU7-27P-201ENST00000459281 62 ntBASIC5.43□□□□□ -1.54
VMP1Q96GC9 CCDC75P1-201ENST00000469247 791 ntBASIC5.43□□□□□ -1.54
VMP1Q96GC9 ST20-201ENST00000478497 1004 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
VMP1Q96GC9 AC012629.1-201ENST00000503953 342 ntTSL 3 BASIC5.43□□□□□ -1.54
VMP1Q96GC9 AC109464.3-201ENST00000509456 204 ntTSL 5 BASIC5.43□□□□□ -1.54
VMP1Q96GC9 AC008592.4-201ENST00000509999 450 ntTSL 3 BASIC5.43□□□□□ -1.54
VMP1Q96GC9 GYPB-213ENST00000513128 360 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 70.3 ms