Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 ATP2C1-205ENST00000504381 3498 ntTSL 2 BASIC5.51□□□□□ -1.53
CCDC42Q96M95 RLIM-201ENST00000332687 8317 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
CCDC42Q96M95 OR55B1P-203ENST00000641518 2602 ntBASIC5.51□□□□□ -1.53
CCDC42Q96M95 LINC01020-202ENST00000508201 1800 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
CCDC42Q96M95 GYS2-201ENST00000261195 3132 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
CCDC42Q96M95 NLRC4-203ENST00000402280 3355 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
CCDC42Q96M95 LINC00624-202ENST00000621316 3372 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
CCDC42Q96M95 SASS6-201ENST00000287482 3880 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
CCDC42Q96M95 AL731566.1-201ENST00000620490 1937 ntBASIC5.51□□□□□ -1.53
CCDC42Q96M95 FANCI-201ENST00000300027 4713 ntAPPRIS P3 TSL 5 BASIC5.51□□□□□ -1.53
CCDC42Q96M95 FAM162A-201ENST00000232125 801 ntTSL 2 BASIC5.51□□□□□ -1.53
CCDC42Q96M95 RNA5SP284-201ENST00000384547 118 ntBASIC5.51□□□□□ -1.53
CCDC42Q96M95 TRGV5P-201ENST00000419915 354 ntBASIC5.51□□□□□ -1.53
CCDC42Q96M95 LINC01363-202ENST00000428030 930 ntTSL 3 BASIC5.51□□□□□ -1.53
CCDC42Q96M95 HMGN1P2-201ENST00000445197 310 ntBASIC5.51□□□□□ -1.53
CCDC42Q96M95 AL139275.1-201ENST00000447315 824 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
CCDC42Q96M95 CLEC2A-202ENST00000455827 916 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
CCDC42Q96M95 DAP3-209ENST00000465375 729 ntTSL 2 BASIC5.51□□□□□ -1.53
CCDC42Q96M95 AC100832.1-201ENST00000471945 383 ntBASIC5.51□□□□□ -1.53
CCDC42Q96M95 AC007998.1-201ENST00000474156 672 ntBASIC5.51□□□□□ -1.53
CCDC42Q96M95 LINC02513-201ENST00000503465 500 ntTSL 2 BASIC5.51□□□□□ -1.53
CCDC42Q96M95 AC115622.1-201ENST00000509628 587 ntTSL 3 BASIC5.51□□□□□ -1.53
CCDC42Q96M95 LINC01489-201ENST00000542689 605 ntTSL 5 BASIC5.51□□□□□ -1.53
CCDC42Q96M95 PYM1-205ENST00000547925 499 ntTSL 3 BASIC5.51□□□□□ -1.53
CCDC42Q96M95 AC127381.1-201ENST00000555979 939 ntBASIC5.51□□□□□ -1.53
CCDC42Q96M95 AC025580.2-202ENST00000558536 715 ntTSL 3 BASIC5.51□□□□□ -1.53
CCDC42Q96M95 AC066613.1-201ENST00000559977 1053 ntTSL 2 BASIC5.51□□□□□ -1.53
CCDC42Q96M95 AP000897.2-201ENST00000579509 1057 ntTSL 3 BASIC5.51□□□□□ -1.53
CCDC42Q96M95 AC024267.4-201ENST00000580782 683 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
CCDC42Q96M95 MIR3936-201ENST00000584304 110 ntBASIC5.51□□□□□ -1.53
CCDC42Q96M95 AL499605.1-201ENST00000604628 403 ntBASIC5.51□□□□□ -1.53
CCDC42Q96M95 ASNSD1-208ENST00000607690 535 ntTSL 2 BASIC5.51□□□□□ -1.53
CCDC42Q96M95 ASNSD1-209ENST00000607829 581 ntTSL 2 BASIC5.51□□□□□ -1.53
CCDC42Q96M95 AC034238.1-215ENST00000609792 219 ntTSL 5 BASIC5.51□□□□□ -1.53
CCDC42Q96M95 AC245041.2-202ENST00000613389 493 ntTSL 5 BASIC5.51□□□□□ -1.53
CCDC42Q96M95 HOTTIP_3.1-201ENST00000619957 337 ntBASIC5.51□□□□□ -1.53
CCDC42Q96M95 LAMTOR5-AS1-244ENST00000629484 780 ntTSL 5 BASIC5.51□□□□□ -1.53
CCDC42Q96M95 TNFSF11-202ENST00000358545 1520 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
CCDC42Q96M95 CNTRL-205ENST00000373850 5824 ntTSL 2 BASIC5.51□□□□□ -1.53
CCDC42Q96M95 SLCO1A2-212ENST00000458504 2008 ntTSL 2 BASIC5.51□□□□□ -1.53
CCDC42Q96M95 SPART-202ENST00000438666 4789 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
CCDC42Q96M95 STX3-208ENST00000641815 3236 ntBASIC5.51□□□□□ -1.53
CCDC42Q96M95 SLC9C1-201ENST00000305815 4172 ntAPPRIS P3 TSL 2 BASIC5.51□□□□□ -1.53
CCDC42Q96M95 MMP16-201ENST00000286614 11558 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
CCDC42Q96M95 SCN2A-201ENST00000283256 8660 ntAPPRIS P5 TSL 1 (best) BASIC5.5□□□□□ -1.53
CCDC42Q96M95 PRLR-203ENST00000348262 1339 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
CCDC42Q96M95 PCDH15-209ENST00000395433 6942 ntTSL 5 BASIC5.5□□□□□ -1.53
CCDC42Q96M95 DYNC2H1-201ENST00000334267 2984 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
CCDC42Q96M95 IL1RAPL1-202ENST00000378993 3667 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
CCDC42Q96M95 SRRM1-203ENST00000447431 3691 ntAPPRIS ALT2 TSL 5 BASIC5.5□□□□□ -1.53
CCDC42Q96M95 AMD1-204ENST00000368885 3438 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
CCDC42Q96M95 GABRA2-211ENST00000514090 3401 ntAPPRIS P1 TSL 5 BASIC5.5□□□□□ -1.53
CCDC42Q96M95 LINC02261-201ENST00000512873 2802 ntTSL 2 BASIC5.5□□□□□ -1.53
CCDC42Q96M95 AP000808.1-201ENST00000512200 3252 ntTSL 2 BASIC5.5□□□□□ -1.53
CCDC42Q96M95 U3.3-201ENST00000362986 216 ntBASIC5.5□□□□□ -1.53
CCDC42Q96M95 TRAJ4-201ENST00000390533 63 ntAPPRIS P1 BASIC5.5□□□□□ -1.53
CCDC42Q96M95 RNU1-149P-201ENST00000390870 161 ntBASIC5.5□□□□□ -1.53
CCDC42Q96M95 AL078599.1-201ENST00000402075 293 ntBASIC5.5□□□□□ -1.53
CCDC42Q96M95 OR6C64P-201ENST00000419708 825 ntBASIC5.5□□□□□ -1.53
CCDC42Q96M95 AL133325.1-201ENST00000421090 382 ntBASIC5.5□□□□□ -1.53
CCDC42Q96M95 AL390115.1-201ENST00000425271 423 ntTSL 5 BASIC5.5□□□□□ -1.53
CCDC42Q96M95 ZDHHC20P1-204ENST00000435787 423 ntBASIC5.5□□□□□ -1.53
CCDC42Q96M95 AC012075.1-201ENST00000436549 580 ntBASIC5.5□□□□□ -1.53
CCDC42Q96M95 AL592494.1-201ENST00000437523 309 ntTSL 5 BASIC5.5□□□□□ -1.53
CCDC42Q96M95 AL606534.1-201ENST00000439562 694 ntTSL 3 BASIC5.5□□□□□ -1.53
CCDC42Q96M95 RPL7P45-201ENST00000455851 743 ntBASIC5.5□□□□□ -1.53
CCDC42Q96M95 AL133445.1-201ENST00000467051 452 ntBASIC5.5□□□□□ -1.53
CCDC42Q96M95 RPL35AP19-201ENST00000469425 329 ntBASIC5.5□□□□□ -1.53
CCDC42Q96M95 SETSIP-201ENST00000485873 879 ntAPPRIS ALT2 BASIC5.5□□□□□ -1.53
CCDC42Q96M95 RPS3A-210ENST00000512690 845 ntTSL 3 BASIC5.5□□□□□ -1.53
CCDC42Q96M95 AC022826.1-201ENST00000519383 805 ntBASIC5.5□□□□□ -1.53
CCDC42Q96M95 HMMR-AS1-202ENST00000521666 800 ntTSL 2 BASIC5.5□□□□□ -1.53
CCDC42Q96M95 AC073023.1-201ENST00000522896 773 ntTSL 5 BASIC5.5□□□□□ -1.53
CCDC42Q96M95 ATXN3-215ENST00000532032 1191 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
CCDC42Q96M95 CA1-224ENST00000542576 1236 ntAPPRIS P1 TSL 5 BASIC5.5□□□□□ -1.53
CCDC42Q96M95 SETP1-201ENST00000556014 845 ntBASIC5.5□□□□□ -1.53
CCDC42Q96M95 NQO1-206ENST00000564043 892 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
CCDC42Q96M95 ARL2BPP3-202ENST00000580773 420 ntTSL 5 BASIC5.5□□□□□ -1.53
CCDC42Q96M95 RN7SL435P-201ENST00000584418 282 ntBASIC5.5□□□□□ -1.53
CCDC42Q96M95 TTN-AS1-219ENST00000586707 834 ntTSL 5 BASIC5.5□□□□□ -1.53
CCDC42Q96M95 AC009093.5-201ENST00000620963 359 ntTSL 2 BASIC5.5□□□□□ -1.53
CCDC42Q96M95 MIR8080-201ENST00000622224 89 ntBASIC5.5□□□□□ -1.53
CCDC42Q96M95 Metazoa_SRP.130-201ENST00000622625 267 ntBASIC5.5□□□□□ -1.53
CCDC42Q96M95 AL691477.1-201ENST00000624398 162 ntBASIC5.5□□□□□ -1.53
CCDC42Q96M95 CDC14A-206ENST00000635056 2056 ntTSL 2 BASIC5.5□□□□□ -1.53
CCDC42Q96M95 VPS13D-213ENST00000613099 16245 ntAPPRIS ALT1 TSL 1 (best) BASIC5.5□□□□□ -1.53
CCDC42Q96M95 DNAH8-201ENST00000327475 14360 ntAPPRIS P2 TSL 5 BASIC5.5□□□□□ -1.53
CCDC42Q96M95 EIF1AY-201ENST00000361365 1390 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
CCDC42Q96M95 AC106895.2-201ENST00000511291 1824 ntTSL 3 BASIC5.5□□□□□ -1.53
CCDC42Q96M95 CLSPN-203ENST00000373220 3977 ntAPPRIS ALT2 TSL 1 (best) BASIC5.5□□□□□ -1.53
CCDC42Q96M95 ACTR3BP5-201ENST00000448440 1479 ntBASIC5.5□□□□□ -1.53
CCDC42Q96M95 UBR5-204ENST00000518205 1931 ntTSL 5 BASIC5.5□□□□□ -1.53
CCDC42Q96M95 VCAM1-203ENST00000370115 2475 ntTSL 5 BASIC5.5□□□□□ -1.53
CCDC42Q96M95 TRAT1-202ENST00000426646 1596 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
CCDC42Q96M95 SMC2-203ENST00000374793 5909 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
CCDC42Q96M95 STAG2-205ENST00000371160 6045 ntAPPRIS P3 TSL 1 (best) BASIC5.5□□□□□ -1.53
CCDC42Q96M95 SLC4A10-203ENST00000415876 5578 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
CCDC42Q96M95 MTUS1-203ENST00000381861 3996 ntAPPRIS P4 TSL 2 BASIC5.49□□□□□ -1.53
CCDC42Q96M95 RASSF6-204ENST00000395777 2735 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
CCDC42Q96M95 USP8-202ENST00000396444 19026 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 108.4 ms