Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 TROVE2-201ENST00000367441 1791 ntAPPRIS P3 TSL 1 (best) BASIC7.86□□□□□ -1.15
LIMD1Q9UGP4 LINC00299-201ENST00000430192 1760 ntTSL 1 (best) BASIC7.86□□□□□ -1.15
LIMD1Q9UGP4 IL1RAP-213ENST00000447382 4769 ntAPPRIS P1 TSL 1 (best) BASIC7.86□□□□□ -1.15
LIMD1Q9UGP4 RNF24-203ENST00000432261 3149 ntTSL 5 BASIC7.86□□□□□ -1.15
LIMD1Q9UGP4 CACNA1D-219ENST00000636938 6868 ntAPPRIS ALT2 TSL 5 BASIC7.86□□□□□ -1.15
LIMD1Q9UGP4 GPR63-201ENST00000229955 5952 ntAPPRIS P1 TSL 1 (best) BASIC7.86□□□□□ -1.15
LIMD1Q9UGP4 BROX-209ENST00000612948 4028 ntTSL 1 (best) BASIC7.86□□□□□ -1.15
LIMD1Q9UGP4 KLRA1P-202ENST00000510134 1410 ntTSL 5 BASIC7.86□□□□□ -1.15
LIMD1Q9UGP4 FPGT-208ENST00000534056 1426 ntTSL 2 BASIC7.86□□□□□ -1.15
LIMD1Q9UGP4 ZNF182-201ENST00000376943 3465 ntAPPRIS ALT2 TSL 1 (best) BASIC7.86□□□□□ -1.15
LIMD1Q9UGP4 TMEM108-201ENST00000321871 3744 ntAPPRIS P3 TSL 1 (best) BASIC7.86□□□□□ -1.15
LIMD1Q9UGP4 UFL1-201ENST00000369278 4224 ntAPPRIS P1 TSL 1 (best) BASIC7.86□□□□□ -1.15
LIMD1Q9UGP4 AC010894.3-201ENST00000442996 2400 ntTSL 1 (best) BASIC7.86□□□□□ -1.15
LIMD1Q9UGP4 APOBEC4-201ENST00000308641 2650 ntAPPRIS P1 TSL 1 (best) BASIC7.85□□□□□ -1.15
LIMD1Q9UGP4 HKR1-201ENST00000324411 2929 ntAPPRIS P3 TSL 1 (best) BASIC7.85□□□□□ -1.15
LIMD1Q9UGP4 PTPN14-205ENST00000543945 3842 ntTSL 5 BASIC7.85□□□□□ -1.15
LIMD1Q9UGP4 MDM4-214ENST00000612738 9407 ntTSL 5 BASIC7.85□□□□□ -1.15
LIMD1Q9UGP4 SORL1-212ENST00000534286 3501 ntTSL 2 BASIC7.85□□□□□ -1.15
LIMD1Q9UGP4 SNX16-202ENST00000353788 3032 ntTSL 1 (best) BASIC7.85□□□□□ -1.15
LIMD1Q9UGP4 ZNF544-216ENST00000600044 2784 ntAPPRIS ALT2 TSL 4 BASIC7.85□□□□□ -1.15
LIMD1Q9UGP4 CAST-204ENST00000341926 2487 ntAPPRIS ALT2 TSL 1 (best) BASIC7.85□□□□□ -1.15
LIMD1Q9UGP4 FAM83B-201ENST00000306858 3167 ntAPPRIS P1 TSL 1 (best) BASIC7.85□□□□□ -1.15
LIMD1Q9UGP4 UBAP2L-203ENST00000361546 3864 ntAPPRIS P1 TSL 1 (best) BASIC7.85□□□□□ -1.15
LIMD1Q9UGP4 MTRNR2L7-201ENST00000544824 1535 ntAPPRIS P1 BASIC7.85□□□□□ -1.15
LIMD1Q9UGP4 AC008985.1-201ENST00000624169 2239 ntBASIC7.85□□□□□ -1.15
LIMD1Q9UGP4 EYA1-202ENST00000340726 4326 ntAPPRIS P3 TSL 1 (best) BASIC7.85□□□□□ -1.15
LIMD1Q9UGP4 PARP2-204ENST00000527915 1980 ntTSL 2 BASIC7.85□□□□□ -1.15
LIMD1Q9UGP4 ADA2-203ENST00000399837 4505 ntAPPRIS P3 TSL 1 (best) BASIC7.85□□□□□ -1.15
LIMD1Q9UGP4 OR11H4-201ENST00000315409 1082 ntBASIC7.85□□□□□ -1.15
LIMD1Q9UGP4 Y_RNA.166-201ENST00000363730 102 ntBASIC7.85□□□□□ -1.15
LIMD1Q9UGP4 RNY3P3-201ENST00000363816 102 ntBASIC7.85□□□□□ -1.15
LIMD1Q9UGP4 AL158212.2-201ENST00000369391 460 ntTSL 3 BASIC7.85□□□□□ -1.15
LIMD1Q9UGP4 SSX9-201ENST00000376909 591 ntBASIC7.85□□□□□ -1.15
LIMD1Q9UGP4 RN7SKP266-201ENST00000410232 287 ntBASIC7.85□□□□□ -1.15
LIMD1Q9UGP4 ZNRF3-IT1-201ENST00000412798 674 ntTSL 5 BASIC7.85□□□□□ -1.15
LIMD1Q9UGP4 AL109924.2-201ENST00000419800 934 ntTSL 1 (best) BASIC7.85□□□□□ -1.15
LIMD1Q9UGP4 COX6CP17-201ENST00000421389 185 ntBASIC7.85□□□□□ -1.15
LIMD1Q9UGP4 LINC01731-201ENST00000428035 420 ntTSL 3 BASIC7.85□□□□□ -1.15
LIMD1Q9UGP4 AC092106.2-201ENST00000436597 487 ntBASIC7.85□□□□□ -1.15
LIMD1Q9UGP4 DNAJA1P6-201ENST00000437347 354 ntBASIC7.85□□□□□ -1.15
LIMD1Q9UGP4 HMGB3P9-201ENST00000441799 583 ntBASIC7.85□□□□□ -1.15
LIMD1Q9UGP4 AC132479.1-201ENST00000449160 144 ntBASIC7.85□□□□□ -1.15
LIMD1Q9UGP4 AC140076.1-201ENST00000449897 361 ntBASIC7.85□□□□□ -1.15
LIMD1Q9UGP4 AC010235.1-201ENST00000450613 547 ntTSL 3 BASIC7.85□□□□□ -1.15
LIMD1Q9UGP4 AC004936.1-201ENST00000451755 361 ntTSL 3 BASIC7.85□□□□□ -1.15
LIMD1Q9UGP4 AC005517.1-201ENST00000452091 489 ntBASIC7.85□□□□□ -1.15
LIMD1Q9UGP4 RN7SL706P-201ENST00000460079 292 ntBASIC7.85□□□□□ -1.15
LIMD1Q9UGP4 RPS20P20-201ENST00000460498 340 ntBASIC7.85□□□□□ -1.15
LIMD1Q9UGP4 RN7SL251P-201ENST00000464175 297 ntBASIC7.85□□□□□ -1.15
LIMD1Q9UGP4 RPL36AP51-201ENST00000487216 318 ntBASIC7.85□□□□□ -1.15
LIMD1Q9UGP4 AC008040.4-201ENST00000494834 768 ntBASIC7.85□□□□□ -1.15
LIMD1Q9UGP4 NPY6R-201ENST00000503807 1112 ntBASIC7.85□□□□□ -1.15
LIMD1Q9UGP4 LINC02379-201ENST00000505741 300 ntTSL 3 BASIC7.85□□□□□ -1.15
LIMD1Q9UGP4 AC011396.1-201ENST00000507391 312 ntTSL 3 BASIC7.85□□□□□ -1.15
LIMD1Q9UGP4 CHCHD2P7-201ENST00000508008 452 ntBASIC7.85□□□□□ -1.15
LIMD1Q9UGP4 AC025176.1-201ENST00000510261 365 ntTSL 4 BASIC7.85□□□□□ -1.15
LIMD1Q9UGP4 AC113385.1-201ENST00000511468 563 ntTSL 4 BASIC7.85□□□□□ -1.15
LIMD1Q9UGP4 EGFLAM-AS2-201ENST00000512603 466 ntTSL 5 BASIC7.85□□□□□ -1.15
LIMD1Q9UGP4 EGFLAM-211ENST00000514476 676 ntTSL 2 BASIC7.85□□□□□ -1.15
LIMD1Q9UGP4 RNU6-150P-201ENST00000516237 95 ntBASIC7.85□□□□□ -1.15
LIMD1Q9UGP4 RNU2-46P-201ENST00000517038 113 ntBASIC7.85□□□□□ -1.15
LIMD1Q9UGP4 AC022390.1-201ENST00000517854 434 ntTSL 3 BASIC7.85□□□□□ -1.15
LIMD1Q9UGP4 AC110288.1-201ENST00000517950 446 ntTSL 3 BASIC7.85□□□□□ -1.15
LIMD1Q9UGP4 LYRM2-203ENST00000520318 677 ntTSL 2 BASIC7.85□□□□□ -1.15
LIMD1Q9UGP4 AC007368.1-201ENST00000536422 974 ntTSL 5 BASIC7.85□□□□□ -1.15
LIMD1Q9UGP4 AC090751.1-201ENST00000566966 267 ntBASIC7.85□□□□□ -1.15
LIMD1Q9UGP4 RN7SL426P-201ENST00000579106 295 ntBASIC7.85□□□□□ -1.15
LIMD1Q9UGP4 AP001180.3-201ENST00000582221 145 ntBASIC7.85□□□□□ -1.15
LIMD1Q9UGP4 GLUD1P2-201ENST00000583339 201 ntBASIC7.85□□□□□ -1.15
LIMD1Q9UGP4 AC096708.3-201ENST00000584226 559 ntTSL 2 BASIC7.85□□□□□ -1.15
LIMD1Q9UGP4 GLUD1P8-201ENST00000585063 203 ntBASIC7.85□□□□□ -1.15
LIMD1Q9UGP4 LINC01539-206ENST00000593282 678 ntTSL 4 BASIC7.85□□□□□ -1.15
LIMD1Q9UGP4 AL391646.1-201ENST00000603860 190 ntBASIC7.85□□□□□ -1.15
LIMD1Q9UGP4 AL136363.1-201ENST00000605349 337 ntBASIC7.85□□□□□ -1.15
LIMD1Q9UGP4 AC018690.1-201ENST00000608144 626 ntBASIC7.85□□□□□ -1.15
LIMD1Q9UGP4 AL022238.3-201ENST00000609279 443 ntBASIC7.85□□□□□ -1.15
LIMD1Q9UGP4 CERS6-AS1-209ENST00000609766 642 ntTSL 5 BASIC7.85□□□□□ -1.15
LIMD1Q9UGP4 AL132765.2-201ENST00000610812 351 ntBASIC7.85□□□□□ -1.15
LIMD1Q9UGP4 AL391903.2-201ENST00000614532 247 ntBASIC7.85□□□□□ -1.15
LIMD1Q9UGP4 AC002429.2-202ENST00000637269 394 ntAPPRIS P1 TSL 3 BASIC7.85□□□□□ -1.15
LIMD1Q9UGP4 OR11H4-203ENST00000641525 1082 ntAPPRIS P1 BASIC7.85□□□□□ -1.15
LIMD1Q9UGP4 SERPINB4-201ENST00000341074 1749 ntAPPRIS P1 TSL 1 (best) BASIC7.85□□□□□ -1.15
LIMD1Q9UGP4 SF3A3P1-201ENST00000446317 1477 ntBASIC7.85□□□□□ -1.15
LIMD1Q9UGP4 AC025125.1-201ENST00000624743 1922 ntBASIC7.85□□□□□ -1.15
LIMD1Q9UGP4 CU638689.4-201ENST00000623047 5990 ntTSL 5 BASIC7.85□□□□□ -1.15
LIMD1Q9UGP4 ITPR1-204ENST00000443694 9513 ntAPPRIS ALT1 TSL 1 (best) BASIC7.85□□□□□ -1.15
LIMD1Q9UGP4 PTER-203ENST00000423462 3212 ntTSL 3 BASIC7.85□□□□□ -1.15
LIMD1Q9UGP4 EPHA7-201ENST00000369297 1885 ntTSL 1 (best) BASIC7.85□□□□□ -1.15
LIMD1Q9UGP4 DPH6-202ENST00000440392 3648 ntTSL 1 (best) BASIC7.85□□□□□ -1.15
LIMD1Q9UGP4 CAP1P2-201ENST00000417455 1409 ntBASIC7.85□□□□□ -1.15
LIMD1Q9UGP4 AL391380.1-201ENST00000439300 1432 ntBASIC7.85□□□□□ -1.15
LIMD1Q9UGP4 ADA2-202ENST00000330232 3195 ntTSL 2 BASIC7.85□□□□□ -1.15
LIMD1Q9UGP4 AC093616.1-201ENST00000427434 2095 ntBASIC7.85□□□□□ -1.15
LIMD1Q9UGP4 CEACAM6-201ENST00000199764 2700 ntAPPRIS P1 TSL 1 (best) BASIC7.85□□□□□ -1.15
LIMD1Q9UGP4 DDX24-201ENST00000330836 2738 ntTSL 1 (best) BASIC7.85□□□□□ -1.15
LIMD1Q9UGP4 AGL-201ENST00000294724 7446 ntAPPRIS P1 TSL 1 (best) BASIC7.85□□□□□ -1.15
LIMD1Q9UGP4 ARMC3-203ENST00000409049 2479 ntAPPRIS ALT2 TSL 1 (best) BASIC7.85□□□□□ -1.15
LIMD1Q9UGP4 AL161891.1-201ENST00000621575 4636 ntBASIC7.85□□□□□ -1.15
LIMD1Q9UGP4 GCSAM-201ENST00000308910 3336 ntAPPRIS P3 TSL 1 (best) BASIC7.85□□□□□ -1.15
LIMD1Q9UGP4 LINC01105-203ENST00000431188 3329 ntTSL 5 BASIC7.85□□□□□ -1.15
Retrieved 100 of 98,524 protein–RNA pairs in 75.9 ms