Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 CEACAM1-207ENST00000403444 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC6.69□□□□□ -1.34
COL6A1P12109 AC013488.1-201ENST00000526618 1838 ntBASIC6.69□□□□□ -1.34
COL6A1P12109 IFIT1-202ENST00000546318 4613 ntTSL 3 BASIC6.69□□□□□ -1.34
COL6A1P12109 AC025263.1-201ENST00000501387 2538 ntTSL 1 (best) BASIC6.69□□□□□ -1.34
COL6A1P12109 CLTC-210ENST00000579456 2301 ntTSL 5 BASIC6.69□□□□□ -1.34
COL6A1P12109 LNPK-212ENST00000544803 7647 ntTSL 1 (best) BASIC6.69□□□□□ -1.34
COL6A1P12109 DEFB1-201ENST00000297439 478 ntAPPRIS P1 TSL 1 (best) BASIC6.69□□□□□ -1.34
COL6A1P12109 NPM1-202ENST00000351986 1237 ntTSL 1 (best) BASIC6.69□□□□□ -1.34
COL6A1P12109 FAS-205ENST00000357339 1044 ntAPPRIS ALT2 TSL 1 (best) BASIC6.69□□□□□ -1.34
COL6A1P12109 RNU105B-201ENST00000364478 208 ntBASIC6.69□□□□□ -1.34
COL6A1P12109 ABCA12-203ENST00000412081 485 ntTSL 2 BASIC6.69□□□□□ -1.34
COL6A1P12109 BX664727.1-201ENST00000416024 466 ntBASIC6.69□□□□□ -1.34
COL6A1P12109 RPS24P7-201ENST00000416921 246 ntBASIC6.69□□□□□ -1.34
COL6A1P12109 MTND2P18-201ENST00000419962 1030 ntBASIC6.69□□□□□ -1.34
COL6A1P12109 AL451047.1-201ENST00000424451 814 ntTSL 3 BASIC6.69□□□□□ -1.34
COL6A1P12109 NPM1P26-201ENST00000426339 738 ntBASIC6.69□□□□□ -1.34
COL6A1P12109 DSTNP5-201ENST00000427921 523 ntBASIC6.69□□□□□ -1.34
COL6A1P12109 LINC01826-201ENST00000432894 584 ntTSL 4 BASIC6.69□□□□□ -1.34
COL6A1P12109 NUDT7-202ENST00000437314 930 ntTSL 1 (best) BASIC6.69□□□□□ -1.34
COL6A1P12109 BMS1P22-202ENST00000440946 1160 ntTSL 1 (best) BASIC6.69□□□□□ -1.34
COL6A1P12109 MTCYBP21-201ENST00000443300 1113 ntBASIC6.69□□□□□ -1.34
COL6A1P12109 AL358794.1-201ENST00000445689 381 ntBASIC6.69□□□□□ -1.34
COL6A1P12109 MOB4-207ENST00000448447 1021 ntTSL 2 BASIC6.69□□□□□ -1.34
COL6A1P12109 AC091976.1-201ENST00000458002 448 ntTSL 3 BASIC6.69□□□□□ -1.34
COL6A1P12109 AC005532.2-201ENST00000467154 373 ntBASIC6.69□□□□□ -1.34
COL6A1P12109 RPS17P15-201ENST00000475609 349 ntBASIC6.69□□□□□ -1.34
COL6A1P12109 RAD21-203ENST00000517749 1003 ntTSL 1 (best) BASIC6.69□□□□□ -1.34
COL6A1P12109 AC022075.3-201ENST00000539009 649 ntTSL 3 BASIC6.69□□□□□ -1.34
COL6A1P12109 AC007569.1-202ENST00000547282 303 ntTSL 3 BASIC6.69□□□□□ -1.34
COL6A1P12109 AC023906.4-201ENST00000557898 895 ntTSL 3 BASIC6.69□□□□□ -1.34
COL6A1P12109 AC009558.2-201ENST00000558258 396 ntTSL 2 BASIC6.69□□□□□ -1.34
COL6A1P12109 AC103876.1-202ENST00000561498 369 ntTSL 3 BASIC6.69□□□□□ -1.34
COL6A1P12109 ZNF418-210ENST00000600989 597 ntTSL 5 BASIC6.69□□□□□ -1.34
COL6A1P12109 AP002802.2-201ENST00000605877 235 ntBASIC6.69□□□□□ -1.34
COL6A1P12109 AC141002.1-201ENST00000607025 279 ntBASIC6.69□□□□□ -1.34
COL6A1P12109 AL021918.2-201ENST00000613415 194 ntBASIC6.69□□□□□ -1.34
COL6A1P12109 AL359513.1-201ENST00000614364 557 ntBASIC6.69□□□□□ -1.34
COL6A1P12109 AC092142.2-201ENST00000614642 354 ntTSL 3 BASIC6.69□□□□□ -1.34
COL6A1P12109 AC074140.1-201ENST00000621617 208 ntBASIC6.69□□□□□ -1.34
COL6A1P12109 AC012254.5-201ENST00000623573 478 ntBASIC6.69□□□□□ -1.34
COL6A1P12109 AL049536.1-201ENST00000625043 744 ntBASIC6.69□□□□□ -1.34
COL6A1P12109 AC083865.1-201ENST00000636634 831 ntBASIC6.69□□□□□ -1.34
COL6A1P12109 MUC5AC-201ENST00000621226 17448 ntAPPRIS P1 TSL 5 BASIC6.69□□□□□ -1.34
COL6A1P12109 ETF1-203ENST00000503014 1736 ntTSL 2 BASIC6.69□□□□□ -1.34
COL6A1P12109 FGFR2-205ENST00000357555 3690 ntTSL 2 BASIC6.69□□□□□ -1.34
COL6A1P12109 ZNF701-202ENST00000391785 2634 ntAPPRIS P3 TSL 1 (best) BASIC6.69□□□□□ -1.34
COL6A1P12109 GTDC1-203ENST00000392867 2408 ntTSL 5 BASIC6.69□□□□□ -1.34
COL6A1P12109 SNX18P3-202ENST00000565670 1750 ntBASIC6.69□□□□□ -1.34
COL6A1P12109 AC104024.1-201ENST00000428142 2201 ntTSL 2 BASIC6.69□□□□□ -1.34
COL6A1P12109 ZFY-202ENST00000383052 5113 ntAPPRIS P1 TSL 5 BASIC6.69□□□□□ -1.34
COL6A1P12109 BORCS7-ASMT-201ENST00000299353 2670 ntAPPRIS P1 TSL 5 BASIC6.69□□□□□ -1.34
COL6A1P12109 MSR1-202ENST00000350896 3572 ntTSL 5 BASIC6.69□□□□□ -1.34
COL6A1P12109 FOXJ3-204ENST00000372572 5352 ntAPPRIS P3 TSL 1 (best) BASIC6.69□□□□□ -1.34
COL6A1P12109 MIPOL1-201ENST00000327441 7185 ntAPPRIS P1 TSL 1 (best) BASIC6.69□□□□□ -1.34
COL6A1P12109 CUZD1-205ENST00000368904 2903 ntAPPRIS P1 TSL 1 (best) BASIC6.69□□□□□ -1.34
COL6A1P12109 ADA2-206ENST00000449907 4278 ntAPPRIS ALT2 TSL 2 BASIC6.69□□□□□ -1.34
COL6A1P12109 CHRM5-201ENST00000383263 5410 ntAPPRIS P1 TSL 2 BASIC6.69□□□□□ -1.34
COL6A1P12109 PUS10-203ENST00000407787 1820 ntAPPRIS P1 TSL 2 BASIC6.69□□□□□ -1.34
COL6A1P12109 BNIP3L-202ENST00000518611 1352 ntTSL 2 BASIC6.69□□□□□ -1.34
COL6A1P12109 HSPA13-201ENST00000285667 3986 ntAPPRIS P1 TSL 1 (best) BASIC6.68□□□□□ -1.34
COL6A1P12109 CWF19L2-201ENST00000282251 3278 ntAPPRIS P1 TSL 1 (best) BASIC6.68□□□□□ -1.34
COL6A1P12109 NME8-203ENST00000440017 1879 ntAPPRIS P1 TSL 1 (best) BASIC6.68□□□□□ -1.34
COL6A1P12109 NIT2-201ENST00000394140 7289 ntAPPRIS P1 TSL 1 (best) BASIC6.68□□□□□ -1.34
COL6A1P12109 PNLIPRP3-201ENST00000369230 2354 ntAPPRIS P1 TSL 1 (best) BASIC6.68□□□□□ -1.34
COL6A1P12109 LINC01741-201ENST00000427173 1666 ntTSL 1 (best) BASIC6.68□□□□□ -1.34
COL6A1P12109 WBP11P1-201ENST00000562560 1931 ntBASIC6.68□□□□□ -1.34
COL6A1P12109 ZNF766-201ENST00000439461 6298 ntAPPRIS P2 TSL 1 (best) BASIC6.68□□□□□ -1.34
COL6A1P12109 ATF7IP2-203ENST00000396559 3641 ntTSL 2 BASIC6.68□□□□□ -1.34
COL6A1P12109 CDC7-201ENST00000234626 3173 ntAPPRIS P1 TSL 1 (best) BASIC6.68□□□□□ -1.34
COL6A1P12109 ZNF329-204ENST00000598312 3410 ntAPPRIS P1 TSL 1 (best) BASIC6.68□□□□□ -1.34
COL6A1P12109 OR2G6-202ENST00000641501 5840 ntAPPRIS P1 BASIC6.68□□□□□ -1.34
COL6A1P12109 KLRC4-KLRK1-201ENST00000539300 1507 ntAPPRIS P5 TSL 2 BASIC6.68□□□□□ -1.34
COL6A1P12109 TRBV23-1-201ENST00000390396 347 ntAPPRIS P1 BASIC6.68□□□□□ -1.34
COL6A1P12109 SYCP3-202ENST00000392924 845 ntAPPRIS P1 TSL 1 (best) BASIC6.68□□□□□ -1.34
COL6A1P12109 AL133270.1-201ENST00000402635 279 ntBASIC6.68□□□□□ -1.34
COL6A1P12109 HMGB3P19-201ENST00000403971 560 ntBASIC6.68□□□□□ -1.34
COL6A1P12109 RNU4-27P-201ENST00000410889 139 ntBASIC6.68□□□□□ -1.34
COL6A1P12109 AC073071.1-201ENST00000412410 388 ntTSL 3 BASIC6.68□□□□□ -1.34
COL6A1P12109 AL596247.1-201ENST00000416076 442 ntTSL 3 BASIC6.68□□□□□ -1.34
COL6A1P12109 RPL23AP18-201ENST00000416139 468 ntBASIC6.68□□□□□ -1.34
COL6A1P12109 LINC01507-201ENST00000417801 446 ntTSL 5 BASIC6.68□□□□□ -1.34
COL6A1P12109 DPP10-AS3-201ENST00000417844 665 ntTSL 1 (best) BASIC6.68□□□□□ -1.34
COL6A1P12109 KRR1P1-201ENST00000419430 803 ntBASIC6.68□□□□□ -1.34
COL6A1P12109 AL391704.3-201ENST00000425365 831 ntTSL 3 BASIC6.68□□□□□ -1.34
COL6A1P12109 MTCO3P30-201ENST00000426425 670 ntBASIC6.68□□□□□ -1.34
COL6A1P12109 AC073283.2-202ENST00000426892 591 ntTSL 4 BASIC6.68□□□□□ -1.34
COL6A1P12109 AL583785.1-201ENST00000428006 512 ntTSL 2 BASIC6.68□□□□□ -1.34
COL6A1P12109 AC004990.1-201ENST00000431722 564 ntTSL 4 BASIC6.68□□□□□ -1.34
COL6A1P12109 ARL5AP3-201ENST00000439327 386 ntBASIC6.68□□□□□ -1.34
COL6A1P12109 C1orf143-201ENST00000443836 762 ntTSL 2 BASIC6.68□□□□□ -1.34
COL6A1P12109 LINC01813-201ENST00000451034 712 ntTSL 1 (best) BASIC6.68□□□□□ -1.34
COL6A1P12109 HMGB1P26-201ENST00000452520 628 ntBASIC6.68□□□□□ -1.34
COL6A1P12109 OFD1P7Y-201ENST00000454643 1155 ntBASIC6.68□□□□□ -1.34
COL6A1P12109 MTND2P28-201ENST00000457540 1044 ntBASIC6.68□□□□□ -1.34
COL6A1P12109 RN7SL30P-201ENST00000488416 306 ntBASIC6.68□□□□□ -1.34
COL6A1P12109 C1orf143-202ENST00000491260 813 ntTSL 3 BASIC6.68□□□□□ -1.34
COL6A1P12109 MOSPD2-206ENST00000497603 775 ntTSL 1 (best) BASIC6.68□□□□□ -1.34
COL6A1P12109 ZBTB20-AS3-201ENST00000498630 464 ntTSL 3 BASIC6.68□□□□□ -1.34
COL6A1P12109 PRELID3BP7-201ENST00000503606 469 ntBASIC6.68□□□□□ -1.34
COL6A1P12109 AC010486.2-201ENST00000505572 483 ntBASIC6.68□□□□□ -1.34
Retrieved 100 of 98,524 protein–RNA pairs in 113.5 ms