Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 CEP162-207ENST00000617909 5095 ntTSL 5 BASIC6.76□□□□□ -1.33
COL3A1P02461 RNVU1-6-201ENST00000364688 164 ntBASIC6.76□□□□□ -1.33
COL3A1P02461 MIR550A3-201ENST00000390735 95 ntBASIC6.76□□□□□ -1.33
COL3A1P02461 IPO11-203ENST00000409534 1725 ntTSL 2 BASIC6.76□□□□□ -1.33
COL3A1P02461 TMEM212-IT1-201ENST00000456146 470 ntTSL 3 BASIC6.76□□□□□ -1.33
COL3A1P02461 LINC00601-201ENST00000456514 1168 ntTSL 3 BASIC6.76□□□□□ -1.33
COL3A1P02461 AC009884.1-201ENST00000522670 545 ntTSL 4 BASIC6.76□□□□□ -1.33
COL3A1P02461 AC012339.2-201ENST00000523996 453 ntBASIC6.76□□□□□ -1.33
COL3A1P02461 CA3-AS1-203ENST00000524052 430 ntTSL 2 BASIC6.76□□□□□ -1.33
COL3A1P02461 AC132219.1-201ENST00000524337 478 ntTSL 5 BASIC6.76□□□□□ -1.33
COL3A1P02461 AP001922.4-201ENST00000526967 290 ntBASIC6.76□□□□□ -1.33
COL3A1P02461 AC138360.1-201ENST00000552332 386 ntTSL 3 BASIC6.76□□□□□ -1.33
COL3A1P02461 AL139354.1-201ENST00000554319 645 ntTSL 5 BASIC6.76□□□□□ -1.33
COL3A1P02461 AL132712.2-201ENST00000556653 127 ntTSL 3 BASIC6.76□□□□□ -1.33
COL3A1P02461 AC015727.1-201ENST00000572792 512 ntTSL 5 BASIC6.76□□□□□ -1.33
COL3A1P02461 SETP3-201ENST00000581726 813 ntBASIC6.76□□□□□ -1.33
COL3A1P02461 AC018695.3-201ENST00000602617 408 ntTSL 2 BASIC6.76□□□□□ -1.33
COL3A1P02461 PCDHB2-203ENST00000624874 565 ntTSL 5 BASIC6.76□□□□□ -1.33
COL3A1P02461 LINC01232-203ENST00000625369 576 ntTSL 4 BASIC6.76□□□□□ -1.33
COL3A1P02461 SORCS1-209ENST00000612154 6862 ntTSL 5 BASIC6.76□□□□□ -1.33
COL3A1P02461 NRG1-220ENST00000539990 2401 ntTSL 2 BASIC6.76□□□□□ -1.33
COL3A1P02461 EFCAB3-201ENST00000305286 1542 ntAPPRIS P1 TSL 1 (best) BASIC6.76□□□□□ -1.33
COL3A1P02461 OPRM1-215ENST00000520708 1519 ntTSL 1 (best) BASIC6.76□□□□□ -1.33
COL3A1P02461 SAMM50P1-201ENST00000455403 1399 ntBASIC6.76□□□□□ -1.33
COL3A1P02461 CASC19-221ENST00000641309 1382 ntBASIC6.76□□□□□ -1.33
COL3A1P02461 RAPGEF4-215ENST00000540783 3974 ntTSL 2 BASIC6.76□□□□□ -1.33
COL3A1P02461 AL033543.1-201ENST00000623440 13454 ntBASIC6.76□□□□□ -1.33
COL3A1P02461 LINC01204-202ENST00000435394 2214 ntTSL 1 (best) BASIC6.76□□□□□ -1.33
COL3A1P02461 ADAM29-203ENST00000445694 3244 ntAPPRIS P1 TSL 1 (best) BASIC6.76□□□□□ -1.33
COL3A1P02461 LINC00989-201ENST00000508174 2080 ntTSL 3 BASIC6.76□□□□□ -1.33
COL3A1P02461 LINC00507-201ENST00000540882 1935 ntTSL 5 BASIC6.76□□□□□ -1.33
COL3A1P02461 WNK3-201ENST00000354646 11341 ntAPPRIS P3 TSL 1 (best) BASIC6.76□□□□□ -1.33
COL3A1P02461 PCDH15-215ENST00000409834 5401 ntTSL 5 BASIC6.75□□□□□ -1.33
COL3A1P02461 SEMA3A-201ENST00000265362 8225 ntAPPRIS P1 TSL 1 (best) BASIC6.75□□□□□ -1.33
COL3A1P02461 FANCD2-203ENST00000419585 5185 ntAPPRIS ALT2 TSL 1 (best) BASIC6.75□□□□□ -1.33
COL3A1P02461 SLC12A6-204ENST00000397707 4194 ntTSL 1 (best) BASIC6.75□□□□□ -1.33
COL3A1P02461 ADAM18-201ENST00000265707 2388 ntAPPRIS P3 TSL 1 (best) BASIC6.75□□□□□ -1.33
COL3A1P02461 SOX2-OT-218ENST00000498731 3576 ntTSL 1 (best) BASIC6.75□□□□□ -1.33
COL3A1P02461 LINC00474-201ENST00000374014 769 ntTSL 1 (best) BASIC6.75□□□□□ -1.33
COL3A1P02461 MTERF4-204ENST00000406593 802 ntTSL 2 BASIC6.75□□□□□ -1.33
COL3A1P02461 AC093162.1-201ENST00000419682 124 ntBASIC6.75□□□□□ -1.33
COL3A1P02461 LINC01945-201ENST00000419784 840 ntTSL 2 BASIC6.75□□□□□ -1.33
COL3A1P02461 AL354766.1-201ENST00000423396 542 ntBASIC6.75□□□□□ -1.33
COL3A1P02461 MGAT2P2-201ENST00000427194 797 ntBASIC6.75□□□□□ -1.33
COL3A1P02461 AL139819.1-201ENST00000429420 471 ntTSL 3 BASIC6.75□□□□□ -1.33
COL3A1P02461 AF064858.2-201ENST00000440714 292 ntTSL 3 BASIC6.75□□□□□ -1.33
COL3A1P02461 AC080162.1-201ENST00000480764 491 ntTSL 3 BASIC6.75□□□□□ -1.33
COL3A1P02461 RN7SL97P-201ENST00000486780 299 ntBASIC6.75□□□□□ -1.33
COL3A1P02461 DUBR-205ENST00000495228 411 ntTSL 2 BASIC6.75□□□□□ -1.33
COL3A1P02461 TM4SF1-AS1-202ENST00000496491 754 ntTSL 2 BASIC6.75□□□□□ -1.33
COL3A1P02461 LINC01340-201ENST00000504012 724 ntTSL 3 BASIC6.75□□□□□ -1.33
COL3A1P02461 AC098976.1-201ENST00000513014 541 ntBASIC6.75□□□□□ -1.33
COL3A1P02461 BTF3P13-201ENST00000513224 490 ntBASIC6.75□□□□□ -1.33
COL3A1P02461 AC027804.1-201ENST00000534653 529 ntTSL 2 BASIC6.75□□□□□ -1.33
COL3A1P02461 TRAV11-201ENST00000539512 339 ntBASIC6.75□□□□□ -1.33
COL3A1P02461 HAGLR-211ENST00000549329 609 ntTSL 4 BASIC6.75□□□□□ -1.33
COL3A1P02461 AL161757.4-204ENST00000557136 834 ntTSL 3 BASIC6.75□□□□□ -1.33
COL3A1P02461 AC105129.1-201ENST00000560250 297 ntBASIC6.75□□□□□ -1.33
COL3A1P02461 ARPP19-204ENST00000563277 955 ntTSL 2 BASIC6.75□□□□□ -1.33
COL3A1P02461 MIR4646-201ENST00000580775 63 ntBASIC6.75□□□□□ -1.33
COL3A1P02461 LINC02073-202ENST00000592081 535 ntTSL 4 BASIC6.75□□□□□ -1.33
COL3A1P02461 BNIP3P39-201ENST00000601077 554 ntBASIC6.75□□□□□ -1.33
COL3A1P02461 CTSLP2-203ENST00000628708 493 ntTSL 5 BASIC6.75□□□□□ -1.33
COL3A1P02461 ZNF93-209ENST00000638737 1020 ntTSL 5 BASIC6.75□□□□□ -1.33
COL3A1P02461 ZNF836-204ENST00000597252 3209 ntAPPRIS P2 TSL 2 BASIC6.75□□□□□ -1.33
COL3A1P02461 SMAD5-211ENST00000545279 7012 ntAPPRIS P1 TSL 1 (best) BASIC6.75□□□□□ -1.33
COL3A1P02461 MLH3-201ENST00000355774 7896 ntAPPRIS P1 TSL 5 BASIC6.75□□□□□ -1.33
COL3A1P02461 OR2G6-202ENST00000641501 5840 ntAPPRIS P1 BASIC6.75□□□□□ -1.33
COL3A1P02461 CEP120-203ENST00000328236 4710 ntAPPRIS P1 TSL 5 BASIC6.75□□□□□ -1.33
COL3A1P02461 INHBA-AS1-203ENST00000422822 2312 ntTSL 2 BASIC6.75□□□□□ -1.33
COL3A1P02461 RABGAP1L-218ENST00000489615 6821 ntTSL 1 (best) BASIC6.75□□□□□ -1.33
COL3A1P02461 PSMA4-201ENST00000044462 4411 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
COL3A1P02461 AC087667.1-201ENST00000500180 1422 ntTSL 1 (best) BASIC6.74□□□□□ -1.33
COL3A1P02461 CACNA1E-209ENST00000621551 14886 ntAPPRIS ALT2 TSL 5 BASIC6.74□□□□□ -1.33
COL3A1P02461 AC018557.1-201ENST00000569274 1790 ntTSL 5 BASIC6.74□□□□□ -1.33
COL3A1P02461 SAMD13-202ENST00000370669 856 ntAPPRIS P1 TSL 3 BASIC6.74□□□□□ -1.33
COL3A1P02461 ASXL1-203ENST00000375689 812 ntTSL 5 BASIC6.74□□□□□ -1.33
COL3A1P02461 SNORA51.8-201ENST00000384234 132 ntBASIC6.74□□□□□ -1.33
COL3A1P02461 SNORA66-201ENST00000384792 133 ntBASIC6.74□□□□□ -1.33
COL3A1P02461 FABP12P1-201ENST00000401911 322 ntBASIC6.74□□□□□ -1.33
COL3A1P02461 GJA6P-201ENST00000415117 1042 ntBASIC6.74□□□□□ -1.33
COL3A1P02461 AC023347.1-202ENST00000419223 440 ntTSL 5 BASIC6.74□□□□□ -1.33
COL3A1P02461 RPA2P2-201ENST00000419698 796 ntBASIC6.74□□□□□ -1.33
COL3A1P02461 IGKV1OR9-1-201ENST00000424370 284 ntBASIC6.74□□□□□ -1.33
COL3A1P02461 AL158840.1-202ENST00000425754 694 ntTSL 3 BASIC6.74□□□□□ -1.33
COL3A1P02461 AC010723.1-201ENST00000435111 540 ntTSL 3 BASIC6.74□□□□□ -1.33
COL3A1P02461 AC000111.2-201ENST00000448200 210 ntBASIC6.74□□□□□ -1.33
COL3A1P02461 AL034380.1-201ENST00000448791 306 ntTSL 3 BASIC6.74□□□□□ -1.33
COL3A1P02461 AL691482.1-201ENST00000453255 87 ntBASIC6.74□□□□□ -1.33
COL3A1P02461 AL035446.1-201ENST00000455011 453 ntTSL 5 BASIC6.74□□□□□ -1.33
COL3A1P02461 AC002075.1-201ENST00000457396 676 ntBASIC6.74□□□□□ -1.33
COL3A1P02461 CDH12P4-201ENST00000517835 295 ntBASIC6.74□□□□□ -1.33
COL3A1P02461 CDH12P3-201ENST00000517935 295 ntBASIC6.74□□□□□ -1.33
COL3A1P02461 CDH12P1-201ENST00000518435 295 ntBASIC6.74□□□□□ -1.33
COL3A1P02461 AC021006.3-201ENST00000530771 192 ntBASIC6.74□□□□□ -1.33
COL3A1P02461 AC007333.2-201ENST00000569998 559 ntTSL 4 BASIC6.74□□□□□ -1.33
COL3A1P02461 AP005059.1-201ENST00000578391 456 ntTSL 2 BASIC6.74□□□□□ -1.33
COL3A1P02461 EIF1P5-201ENST00000585002 234 ntBASIC6.74□□□□□ -1.33
COL3A1P02461 AC091953.3-201ENST00000623220 236 ntBASIC6.74□□□□□ -1.33
COL3A1P02461 ADNP-202ENST00000371602 6115 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
Retrieved 100 of 98,524 protein–RNA pairs in 146.4 ms