Protein–RNA interactions for Protein: Q9Y6N9

USH1C, Harmonin, humanhuman

Predictions only

Length 552 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH1CQ9Y6N9 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
USH1CQ9Y6N9 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
USH1CQ9Y6N9 AC009113.1-201ENST00000570267 2443 ntBASIC19.49■□□□□ 0.71
USH1CQ9Y6N9 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC19.49■□□□□ 0.71
USH1CQ9Y6N9 TMEM65-201ENST00000297632 9029 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
USH1CQ9Y6N9 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC19.48■□□□□ 0.71
USH1CQ9Y6N9 BEND4-202ENST00000504360 8692 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
USH1CQ9Y6N9 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC19.48■□□□□ 0.71
USH1CQ9Y6N9 AC104581.1-202ENST00000635932 2618 ntBASIC19.48■□□□□ 0.71
USH1CQ9Y6N9 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC19.48■□□□□ 0.71
USH1CQ9Y6N9 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
USH1CQ9Y6N9 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
USH1CQ9Y6N9 SAPCD2P1-201ENST00000395413 1184 ntBASIC19.48■□□□□ 0.71
USH1CQ9Y6N9 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC19.48■□□□□ 0.71
USH1CQ9Y6N9 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC19.48■□□□□ 0.71
USH1CQ9Y6N9 AL031432.3-201ENST00000607698 485 ntBASIC19.48■□□□□ 0.71
USH1CQ9Y6N9 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
USH1CQ9Y6N9 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
USH1CQ9Y6N9 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC19.48■□□□□ 0.71
USH1CQ9Y6N9 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
USH1CQ9Y6N9 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
USH1CQ9Y6N9 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
USH1CQ9Y6N9 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
USH1CQ9Y6N9 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC19.48■□□□□ 0.71
USH1CQ9Y6N9 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
USH1CQ9Y6N9 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC19.48■□□□□ 0.71
USH1CQ9Y6N9 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
USH1CQ9Y6N9 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
USH1CQ9Y6N9 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC19.48■□□□□ 0.71
USH1CQ9Y6N9 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
USH1CQ9Y6N9 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
USH1CQ9Y6N9 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
USH1CQ9Y6N9 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
USH1CQ9Y6N9 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
USH1CQ9Y6N9 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
USH1CQ9Y6N9 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
USH1CQ9Y6N9 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
USH1CQ9Y6N9 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
USH1CQ9Y6N9 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC19.47■□□□□ 0.71
USH1CQ9Y6N9 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC19.47■□□□□ 0.71
USH1CQ9Y6N9 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC19.47■□□□□ 0.71
USH1CQ9Y6N9 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC19.47■□□□□ 0.71
USH1CQ9Y6N9 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
USH1CQ9Y6N9 FZD10-202ENST00000539839 3282 ntBASIC19.47■□□□□ 0.71
USH1CQ9Y6N9 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
USH1CQ9Y6N9 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC19.47■□□□□ 0.71
USH1CQ9Y6N9 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC19.47■□□□□ 0.71
USH1CQ9Y6N9 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
USH1CQ9Y6N9 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
USH1CQ9Y6N9 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
USH1CQ9Y6N9 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC19.46■□□□□ 0.71
USH1CQ9Y6N9 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC19.46■□□□□ 0.71
USH1CQ9Y6N9 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
USH1CQ9Y6N9 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
USH1CQ9Y6N9 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC19.46■□□□□ 0.71
USH1CQ9Y6N9 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
USH1CQ9Y6N9 AC135050.7-201ENST00000624508 2218 ntBASIC19.46■□□□□ 0.71
USH1CQ9Y6N9 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
USH1CQ9Y6N9 NME4-202ENST00000382940 766 ntTSL 3 BASIC19.46■□□□□ 0.71
USH1CQ9Y6N9 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC19.46■□□□□ 0.71
USH1CQ9Y6N9 KRT18P20-201ENST00000548986 1279 ntBASIC19.46■□□□□ 0.71
USH1CQ9Y6N9 NME4-211ENST00000620944 1193 ntTSL 2 BASIC19.46■□□□□ 0.71
USH1CQ9Y6N9 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
USH1CQ9Y6N9 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
USH1CQ9Y6N9 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC19.46■□□□□ 0.71
USH1CQ9Y6N9 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
USH1CQ9Y6N9 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC19.46■□□□□ 0.71
USH1CQ9Y6N9 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
USH1CQ9Y6N9 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC19.46■□□□□ 0.71
USH1CQ9Y6N9 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC19.46■□□□□ 0.71
USH1CQ9Y6N9 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
USH1CQ9Y6N9 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC19.46■□□□□ 0.71
USH1CQ9Y6N9 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
USH1CQ9Y6N9 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC19.46■□□□□ 0.71
USH1CQ9Y6N9 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC19.45■□□□□ 0.7
USH1CQ9Y6N9 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
USH1CQ9Y6N9 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
USH1CQ9Y6N9 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC19.45■□□□□ 0.7
USH1CQ9Y6N9 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
USH1CQ9Y6N9 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
USH1CQ9Y6N9 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC19.45■□□□□ 0.7
USH1CQ9Y6N9 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC19.45■□□□□ 0.7
USH1CQ9Y6N9 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
USH1CQ9Y6N9 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
USH1CQ9Y6N9 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
USH1CQ9Y6N9 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
USH1CQ9Y6N9 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
USH1CQ9Y6N9 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
USH1CQ9Y6N9 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC19.45■□□□□ 0.7
USH1CQ9Y6N9 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
USH1CQ9Y6N9 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
USH1CQ9Y6N9 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
USH1CQ9Y6N9 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
USH1CQ9Y6N9 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC19.45■□□□□ 0.7
USH1CQ9Y6N9 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC19.45■□□□□ 0.7
USH1CQ9Y6N9 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC19.45■□□□□ 0.7
USH1CQ9Y6N9 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
USH1CQ9Y6N9 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
USH1CQ9Y6N9 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC19.45■□□□□ 0.7
USH1CQ9Y6N9 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 19.1 ms