Protein–RNA interactions for Protein: Q9Y5I7

CLDN16, Claudin-16, humanhuman

Predictions only

Length 305 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN16Q9Y5I7 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
CLDN16Q9Y5I7 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC18.27■□□□□ 0.52
CLDN16Q9Y5I7 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CLDN16Q9Y5I7 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC18.27■□□□□ 0.52
CLDN16Q9Y5I7 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CLDN16Q9Y5I7 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CLDN16Q9Y5I7 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CLDN16Q9Y5I7 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC18.27■□□□□ 0.52
CLDN16Q9Y5I7 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC18.27■□□□□ 0.52
CLDN16Q9Y5I7 HLA-A-209ENST00000638375 975 ntBASIC18.27■□□□□ 0.52
CLDN16Q9Y5I7 AP006294.2-201ENST00000641667 209 ntBASIC18.27■□□□□ 0.52
CLDN16Q9Y5I7 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.52
CLDN16Q9Y5I7 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.52
CLDN16Q9Y5I7 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC18.27■□□□□ 0.52
CLDN16Q9Y5I7 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC18.27■□□□□ 0.52
CLDN16Q9Y5I7 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
CLDN16Q9Y5I7 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
CLDN16Q9Y5I7 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
CLDN16Q9Y5I7 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CLDN16Q9Y5I7 PWWP2AP1-201ENST00000429776 2273 ntBASIC18.26■□□□□ 0.51
CLDN16Q9Y5I7 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
CLDN16Q9Y5I7 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
CLDN16Q9Y5I7 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
CLDN16Q9Y5I7 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
CLDN16Q9Y5I7 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC18.26■□□□□ 0.51
CLDN16Q9Y5I7 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
CLDN16Q9Y5I7 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
CLDN16Q9Y5I7 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC18.26■□□□□ 0.51
CLDN16Q9Y5I7 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC18.26■□□□□ 0.51
CLDN16Q9Y5I7 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CLDN16Q9Y5I7 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
CLDN16Q9Y5I7 MDFI-202ENST00000373050 809 ntTSL 2 BASIC18.26■□□□□ 0.51
CLDN16Q9Y5I7 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
CLDN16Q9Y5I7 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC18.26■□□□□ 0.51
CLDN16Q9Y5I7 NIFKP9-201ENST00000419265 221 ntBASIC18.26■□□□□ 0.51
CLDN16Q9Y5I7 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC18.26■□□□□ 0.51
CLDN16Q9Y5I7 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC18.26■□□□□ 0.51
CLDN16Q9Y5I7 AC113410.3-201ENST00000623366 203 ntBASIC18.26■□□□□ 0.51
CLDN16Q9Y5I7 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC18.26■□□□□ 0.51
CLDN16Q9Y5I7 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CLDN16Q9Y5I7 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
CLDN16Q9Y5I7 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CLDN16Q9Y5I7 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC18.26■□□□□ 0.51
CLDN16Q9Y5I7 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CLDN16Q9Y5I7 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
CLDN16Q9Y5I7 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
CLDN16Q9Y5I7 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
CLDN16Q9Y5I7 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CLDN16Q9Y5I7 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
CLDN16Q9Y5I7 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
CLDN16Q9Y5I7 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CLDN16Q9Y5I7 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
CLDN16Q9Y5I7 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC18.25■□□□□ 0.51
CLDN16Q9Y5I7 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CLDN16Q9Y5I7 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC18.25■□□□□ 0.51
CLDN16Q9Y5I7 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CLDN16Q9Y5I7 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
CLDN16Q9Y5I7 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
CLDN16Q9Y5I7 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC18.25■□□□□ 0.51
CLDN16Q9Y5I7 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
CLDN16Q9Y5I7 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC18.25■□□□□ 0.51
CLDN16Q9Y5I7 SAPCD2P4-201ENST00000424595 1171 ntBASIC18.25■□□□□ 0.51
CLDN16Q9Y5I7 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC18.25■□□□□ 0.51
CLDN16Q9Y5I7 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC18.25■□□□□ 0.51
CLDN16Q9Y5I7 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
CLDN16Q9Y5I7 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC18.25■□□□□ 0.51
CLDN16Q9Y5I7 RPS2P4-201ENST00000476944 856 ntBASIC18.25■□□□□ 0.51
CLDN16Q9Y5I7 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CLDN16Q9Y5I7 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC18.25■□□□□ 0.51
CLDN16Q9Y5I7 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC18.25■□□□□ 0.51
CLDN16Q9Y5I7 AL049637.2-201ENST00000641778 930 ntBASIC18.25■□□□□ 0.51
CLDN16Q9Y5I7 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CLDN16Q9Y5I7 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC18.25■□□□□ 0.51
CLDN16Q9Y5I7 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
CLDN16Q9Y5I7 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC18.25■□□□□ 0.51
CLDN16Q9Y5I7 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
CLDN16Q9Y5I7 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CLDN16Q9Y5I7 AL135905.2-201ENST00000584934 1404 ntBASIC18.24■□□□□ 0.51
CLDN16Q9Y5I7 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC18.24■□□□□ 0.51
CLDN16Q9Y5I7 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CLDN16Q9Y5I7 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CLDN16Q9Y5I7 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CLDN16Q9Y5I7 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
CLDN16Q9Y5I7 AL353807.1-201ENST00000427475 662 ntBASIC18.24■□□□□ 0.51
CLDN16Q9Y5I7 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC18.24■□□□□ 0.51
CLDN16Q9Y5I7 GRAP-204ENST00000573099 846 ntTSL 3 BASIC18.24■□□□□ 0.51
CLDN16Q9Y5I7 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC18.24■□□□□ 0.51
CLDN16Q9Y5I7 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC18.24■□□□□ 0.51
CLDN16Q9Y5I7 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC18.24■□□□□ 0.51
CLDN16Q9Y5I7 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC18.24■□□□□ 0.51
CLDN16Q9Y5I7 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CLDN16Q9Y5I7 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
CLDN16Q9Y5I7 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC18.24■□□□□ 0.51
CLDN16Q9Y5I7 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CLDN16Q9Y5I7 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
CLDN16Q9Y5I7 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
CLDN16Q9Y5I7 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC18.23■□□□□ 0.51
CLDN16Q9Y5I7 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC18.23■□□□□ 0.51
CLDN16Q9Y5I7 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC18.23■□□□□ 0.51
CLDN16Q9Y5I7 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 33 ms