Protein–RNA interactions for Protein: Q9Y3Y2

CHTOP, Chromatin target of PRMT1 protein, humanhuman

Known RBP Predictions only

Length 248 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHTOPQ9Y3Y2 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CHTOPQ9Y3Y2 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC14.04□□□□□ -0.16
CHTOPQ9Y3Y2 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
CHTOPQ9Y3Y2 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC14.04□□□□□ -0.16
CHTOPQ9Y3Y2 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC14.04□□□□□ -0.16
CHTOPQ9Y3Y2 SATB1-201ENST00000338745 7810 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CHTOPQ9Y3Y2 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CHTOPQ9Y3Y2 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
CHTOPQ9Y3Y2 IFRD1-205ENST00000429071 1938 ntTSL 2 BASIC14.03□□□□□ -0.16
CHTOPQ9Y3Y2 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC14.03□□□□□ -0.16
CHTOPQ9Y3Y2 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
CHTOPQ9Y3Y2 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC14.03□□□□□ -0.16
CHTOPQ9Y3Y2 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
CHTOPQ9Y3Y2 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CHTOPQ9Y3Y2 CACNA1I-201ENST00000401624 6740 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
CHTOPQ9Y3Y2 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
CHTOPQ9Y3Y2 ARHGAP11A-201ENST00000361627 5898 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CHTOPQ9Y3Y2 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
CHTOPQ9Y3Y2 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
CHTOPQ9Y3Y2 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
CHTOPQ9Y3Y2 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC14.03□□□□□ -0.16
CHTOPQ9Y3Y2 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC14.03□□□□□ -0.16
CHTOPQ9Y3Y2 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
CHTOPQ9Y3Y2 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC14.03□□□□□ -0.16
CHTOPQ9Y3Y2 FAM135A-205ENST00000418814 6415 ntTSL 5 BASIC14.03□□□□□ -0.16
CHTOPQ9Y3Y2 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CHTOPQ9Y3Y2 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
CHTOPQ9Y3Y2 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC14.03□□□□□ -0.16
CHTOPQ9Y3Y2 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC14.03□□□□□ -0.16
CHTOPQ9Y3Y2 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC14.03□□□□□ -0.16
CHTOPQ9Y3Y2 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC14.03□□□□□ -0.16
CHTOPQ9Y3Y2 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
CHTOPQ9Y3Y2 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC14.03□□□□□ -0.16
CHTOPQ9Y3Y2 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
CHTOPQ9Y3Y2 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
CHTOPQ9Y3Y2 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
CHTOPQ9Y3Y2 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CHTOPQ9Y3Y2 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CHTOPQ9Y3Y2 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CHTOPQ9Y3Y2 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
CHTOPQ9Y3Y2 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC14.03□□□□□ -0.16
CHTOPQ9Y3Y2 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC14.03□□□□□ -0.16
CHTOPQ9Y3Y2 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC14.03□□□□□ -0.16
CHTOPQ9Y3Y2 AC103702.1-201ENST00000548801 2630 ntBASIC14.03□□□□□ -0.16
CHTOPQ9Y3Y2 CDK16-202ENST00000357227 3144 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CHTOPQ9Y3Y2 LINC00094-205ENST00000603928 5722 ntAPPRIS ALT2 TSL 2 BASIC14.03□□□□□ -0.16
CHTOPQ9Y3Y2 JMY-201ENST00000396137 9042 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
CHTOPQ9Y3Y2 IGF2-204ENST00000381406 5179 ntAPPRIS ALT1 TSL 2 BASIC14.02□□□□□ -0.16
CHTOPQ9Y3Y2 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC14.02□□□□□ -0.16
CHTOPQ9Y3Y2 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC14.02□□□□□ -0.16
CHTOPQ9Y3Y2 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
CHTOPQ9Y3Y2 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
CHTOPQ9Y3Y2 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC14.02□□□□□ -0.16
CHTOPQ9Y3Y2 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
CHTOPQ9Y3Y2 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC14.02□□□□□ -0.16
CHTOPQ9Y3Y2 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
CHTOPQ9Y3Y2 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC14.02□□□□□ -0.16
CHTOPQ9Y3Y2 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC14.02□□□□□ -0.16
CHTOPQ9Y3Y2 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.16
CHTOPQ9Y3Y2 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
CHTOPQ9Y3Y2 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC14.02□□□□□ -0.16
CHTOPQ9Y3Y2 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.16
CHTOPQ9Y3Y2 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC14.02□□□□□ -0.16
CHTOPQ9Y3Y2 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC14.02□□□□□ -0.16
CHTOPQ9Y3Y2 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
CHTOPQ9Y3Y2 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
CHTOPQ9Y3Y2 AP004607.4-201ENST00000530158 1459 ntBASIC14.02□□□□□ -0.16
CHTOPQ9Y3Y2 NEO1-202ENST00000339362 7342 ntAPPRIS P3 TSL 5 BASIC14.02□□□□□ -0.16
CHTOPQ9Y3Y2 ELF2-204ENST00000394235 4012 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.17
CHTOPQ9Y3Y2 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC14.02□□□□□ -0.17
CHTOPQ9Y3Y2 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC14.02□□□□□ -0.17
CHTOPQ9Y3Y2 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC14.02□□□□□ -0.17
CHTOPQ9Y3Y2 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC14.02□□□□□ -0.17
CHTOPQ9Y3Y2 MIR2861-201ENST00000636310 90 ntBASIC14.02□□□□□ -0.17
CHTOPQ9Y3Y2 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC14.02□□□□□ -0.17
CHTOPQ9Y3Y2 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
CHTOPQ9Y3Y2 ITGB2-207ENST00000397854 2592 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
CHTOPQ9Y3Y2 C1R-202ENST00000536053 2347 ntTSL 2 BASIC14.02□□□□□ -0.17
CHTOPQ9Y3Y2 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.17
CHTOPQ9Y3Y2 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CHTOPQ9Y3Y2 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC14.01□□□□□ -0.17
CHTOPQ9Y3Y2 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
CHTOPQ9Y3Y2 AL662844.4-201ENST00000606367 2838 ntBASIC14.01□□□□□ -0.17
CHTOPQ9Y3Y2 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CHTOPQ9Y3Y2 SLC39A6-202ENST00000440549 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
CHTOPQ9Y3Y2 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC14.01□□□□□ -0.17
CHTOPQ9Y3Y2 MAGI1-213ENST00000483466 4791 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
CHTOPQ9Y3Y2 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CHTOPQ9Y3Y2 BX119927.1-201ENST00000636596 1552 ntBASIC14.01□□□□□ -0.17
CHTOPQ9Y3Y2 NTRK2-207ENST00000376214 5608 ntAPPRIS P3 TSL 5 BASIC14.01□□□□□ -0.17
CHTOPQ9Y3Y2 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC14.01□□□□□ -0.17
CHTOPQ9Y3Y2 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC14.01□□□□□ -0.17
CHTOPQ9Y3Y2 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CHTOPQ9Y3Y2 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CHTOPQ9Y3Y2 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
CHTOPQ9Y3Y2 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CHTOPQ9Y3Y2 GUK1-208ENST00000366728 842 ntTSL 2 BASIC14.01□□□□□ -0.17
CHTOPQ9Y3Y2 FXN-202ENST00000396364 980 ntTSL 5 BASIC14.01□□□□□ -0.17
CHTOPQ9Y3Y2 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CHTOPQ9Y3Y2 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC14.01□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 21.5 ms