Protein–RNA interactions for Protein: Q9Y2D8

SSX2IP, Afadin- and alpha-actinin-binding protein, humanhuman

Predictions only

Length 614 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX2IPQ9Y2D8 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
SSX2IPQ9Y2D8 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC21.04■□□□□ 0.96
SSX2IPQ9Y2D8 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC21.04■□□□□ 0.96
SSX2IPQ9Y2D8 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
SSX2IPQ9Y2D8 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
SSX2IPQ9Y2D8 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
SSX2IPQ9Y2D8 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC21.04■□□□□ 0.96
SSX2IPQ9Y2D8 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
SSX2IPQ9Y2D8 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
SSX2IPQ9Y2D8 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC21.04■□□□□ 0.96
SSX2IPQ9Y2D8 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
SSX2IPQ9Y2D8 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC21.04■□□□□ 0.96
SSX2IPQ9Y2D8 C1QL1P1-201ENST00000568105 661 ntBASIC21.04■□□□□ 0.96
SSX2IPQ9Y2D8 RN7SL850P-201ENST00000579959 291 ntBASIC21.04■□□□□ 0.96
SSX2IPQ9Y2D8 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
SSX2IPQ9Y2D8 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC21.04■□□□□ 0.96
SSX2IPQ9Y2D8 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
SSX2IPQ9Y2D8 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
SSX2IPQ9Y2D8 FSCN1P1-201ENST00000568912 1481 ntBASIC21.04■□□□□ 0.96
SSX2IPQ9Y2D8 AC116351.2-201ENST00000606540 1585 ntBASIC21.04■□□□□ 0.96
SSX2IPQ9Y2D8 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC21.04■□□□□ 0.96
SSX2IPQ9Y2D8 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
SSX2IPQ9Y2D8 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
SSX2IPQ9Y2D8 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC21.04■□□□□ 0.96
SSX2IPQ9Y2D8 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
SSX2IPQ9Y2D8 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC21.03■□□□□ 0.96
SSX2IPQ9Y2D8 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC21.03■□□□□ 0.96
SSX2IPQ9Y2D8 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
SSX2IPQ9Y2D8 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC21.03■□□□□ 0.96
SSX2IPQ9Y2D8 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC21.03■□□□□ 0.96
SSX2IPQ9Y2D8 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
SSX2IPQ9Y2D8 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC21.03■□□□□ 0.96
SSX2IPQ9Y2D8 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
SSX2IPQ9Y2D8 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC21.03■□□□□ 0.96
SSX2IPQ9Y2D8 YBX1P10-201ENST00000444752 975 ntBASIC21.03■□□□□ 0.96
SSX2IPQ9Y2D8 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC21.03■□□□□ 0.96
SSX2IPQ9Y2D8 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC21.03■□□□□ 0.96
SSX2IPQ9Y2D8 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC21.03■□□□□ 0.96
SSX2IPQ9Y2D8 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC21.03■□□□□ 0.96
SSX2IPQ9Y2D8 AL445675.2-201ENST00000620291 557 ntBASIC21.03■□□□□ 0.96
SSX2IPQ9Y2D8 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC21.03■□□□□ 0.96
SSX2IPQ9Y2D8 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
SSX2IPQ9Y2D8 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC21.03■□□□□ 0.96
SSX2IPQ9Y2D8 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC21.03■□□□□ 0.96
SSX2IPQ9Y2D8 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC21.03■□□□□ 0.96
SSX2IPQ9Y2D8 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
SSX2IPQ9Y2D8 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC21.02■□□□□ 0.96
SSX2IPQ9Y2D8 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
SSX2IPQ9Y2D8 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC21.02■□□□□ 0.96
SSX2IPQ9Y2D8 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
SSX2IPQ9Y2D8 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
SSX2IPQ9Y2D8 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC21.02■□□□□ 0.96
SSX2IPQ9Y2D8 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC21.02■□□□□ 0.96
SSX2IPQ9Y2D8 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC21.02■□□□□ 0.96
SSX2IPQ9Y2D8 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC21.02■□□□□ 0.96
SSX2IPQ9Y2D8 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC21.02■□□□□ 0.96
SSX2IPQ9Y2D8 P4HB-223ENST00000576390 439 ntTSL 4 BASIC21.02■□□□□ 0.96
SSX2IPQ9Y2D8 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC21.02■□□□□ 0.96
SSX2IPQ9Y2D8 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
SSX2IPQ9Y2D8 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
SSX2IPQ9Y2D8 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC21.02■□□□□ 0.96
SSX2IPQ9Y2D8 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
SSX2IPQ9Y2D8 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
SSX2IPQ9Y2D8 DPP3P2-201ENST00000416030 1696 ntBASIC21.02■□□□□ 0.95
SSX2IPQ9Y2D8 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC21.02■□□□□ 0.95
SSX2IPQ9Y2D8 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
SSX2IPQ9Y2D8 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC21.01■□□□□ 0.95
SSX2IPQ9Y2D8 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SSX2IPQ9Y2D8 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SSX2IPQ9Y2D8 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
SSX2IPQ9Y2D8 FP700111.2-201ENST00000619190 1892 ntBASIC21.01■□□□□ 0.95
SSX2IPQ9Y2D8 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
SSX2IPQ9Y2D8 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SSX2IPQ9Y2D8 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SSX2IPQ9Y2D8 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SSX2IPQ9Y2D8 PPP1R14BP5-201ENST00000440334 435 ntBASIC21.01■□□□□ 0.95
SSX2IPQ9Y2D8 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC21.01■□□□□ 0.95
SSX2IPQ9Y2D8 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC21.01■□□□□ 0.95
SSX2IPQ9Y2D8 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC21.01■□□□□ 0.95
SSX2IPQ9Y2D8 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC21.01■□□□□ 0.95
SSX2IPQ9Y2D8 AL590326.2-201ENST00000625139 305 ntBASIC21.01■□□□□ 0.95
SSX2IPQ9Y2D8 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC21.01■□□□□ 0.95
SSX2IPQ9Y2D8 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
SSX2IPQ9Y2D8 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
SSX2IPQ9Y2D8 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
SSX2IPQ9Y2D8 TFP1-202ENST00000475455 1573 ntBASIC21.01■□□□□ 0.95
SSX2IPQ9Y2D8 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC21.01■□□□□ 0.95
SSX2IPQ9Y2D8 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC21.01■□□□□ 0.95
SSX2IPQ9Y2D8 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC21.01■□□□□ 0.95
SSX2IPQ9Y2D8 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC21.01■□□□□ 0.95
SSX2IPQ9Y2D8 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
SSX2IPQ9Y2D8 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
SSX2IPQ9Y2D8 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
SSX2IPQ9Y2D8 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC21■□□□□ 0.95
SSX2IPQ9Y2D8 AC006128.1-201ENST00000624704 1661 ntBASIC21■□□□□ 0.95
SSX2IPQ9Y2D8 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC21■□□□□ 0.95
SSX2IPQ9Y2D8 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
SSX2IPQ9Y2D8 CRAT-202ENST00000393384 973 ntTSL 2 BASIC21■□□□□ 0.95
SSX2IPQ9Y2D8 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC21■□□□□ 0.95
SSX2IPQ9Y2D8 AC113347.1-201ENST00000413321 391 ntBASIC21■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 34.2 ms