Protein–RNA interactions for Protein: Q9UBD9

CLCF1, Cardiotrophin-like cytokine factor 1, humanhuman

Predictions only

Length 225 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCF1Q9UBD9 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CLCF1Q9UBD9 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CLCF1Q9UBD9 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CLCF1Q9UBD9 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
CLCF1Q9UBD9 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
CLCF1Q9UBD9 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
CLCF1Q9UBD9 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC17.43■□□□□ 0.38
CLCF1Q9UBD9 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC17.43■□□□□ 0.38
CLCF1Q9UBD9 AL031985.4-201ENST00000642138 673 ntBASIC17.43■□□□□ 0.38
CLCF1Q9UBD9 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC17.43■□□□□ 0.38
CLCF1Q9UBD9 AL691432.2-201ENST00000607222 2038 ntBASIC17.43■□□□□ 0.38
CLCF1Q9UBD9 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
CLCF1Q9UBD9 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CLCF1Q9UBD9 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
CLCF1Q9UBD9 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CLCF1Q9UBD9 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CLCF1Q9UBD9 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC17.42■□□□□ 0.38
CLCF1Q9UBD9 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
CLCF1Q9UBD9 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
CLCF1Q9UBD9 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
CLCF1Q9UBD9 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC17.42■□□□□ 0.38
CLCF1Q9UBD9 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CLCF1Q9UBD9 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CLCF1Q9UBD9 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
CLCF1Q9UBD9 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CLCF1Q9UBD9 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CLCF1Q9UBD9 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC17.42■□□□□ 0.38
CLCF1Q9UBD9 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
CLCF1Q9UBD9 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC17.42■□□□□ 0.38
CLCF1Q9UBD9 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC17.42■□□□□ 0.38
CLCF1Q9UBD9 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
CLCF1Q9UBD9 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
CLCF1Q9UBD9 ECEL1P3-201ENST00000427961 737 ntBASIC17.42■□□□□ 0.38
CLCF1Q9UBD9 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CLCF1Q9UBD9 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC17.42■□□□□ 0.38
CLCF1Q9UBD9 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC17.42■□□□□ 0.38
CLCF1Q9UBD9 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC17.42■□□□□ 0.38
CLCF1Q9UBD9 ABBA01031674.1-201ENST00000635145 728 ntBASIC17.42■□□□□ 0.38
CLCF1Q9UBD9 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC17.42■□□□□ 0.38
CLCF1Q9UBD9 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CLCF1Q9UBD9 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC17.42■□□□□ 0.38
CLCF1Q9UBD9 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC17.42■□□□□ 0.38
CLCF1Q9UBD9 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
CLCF1Q9UBD9 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CLCF1Q9UBD9 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
CLCF1Q9UBD9 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC17.42■□□□□ 0.38
CLCF1Q9UBD9 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CLCF1Q9UBD9 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC17.41■□□□□ 0.38
CLCF1Q9UBD9 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
CLCF1Q9UBD9 AC092667.1-201ENST00000434301 2586 ntBASIC17.41■□□□□ 0.38
CLCF1Q9UBD9 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC17.41■□□□□ 0.38
CLCF1Q9UBD9 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
CLCF1Q9UBD9 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CLCF1Q9UBD9 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC17.41■□□□□ 0.38
CLCF1Q9UBD9 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC17.41■□□□□ 0.38
CLCF1Q9UBD9 AC009237.14-201ENST00000609975 1594 ntBASIC17.41■□□□□ 0.38
CLCF1Q9UBD9 AC138932.1-201ENST00000534164 6830 ntBASIC17.41■□□□□ 0.38
CLCF1Q9UBD9 UNC93B2-201ENST00000285383 730 ntBASIC17.41■□□□□ 0.38
CLCF1Q9UBD9 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CLCF1Q9UBD9 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CLCF1Q9UBD9 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
CLCF1Q9UBD9 AC004980.1-204ENST00000429707 299 ntBASIC17.41■□□□□ 0.38
CLCF1Q9UBD9 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CLCF1Q9UBD9 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
CLCF1Q9UBD9 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CLCF1Q9UBD9 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CLCF1Q9UBD9 LINC01023-201ENST00000606054 436 ntBASIC17.41■□□□□ 0.38
CLCF1Q9UBD9 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC17.41■□□□□ 0.38
CLCF1Q9UBD9 HLA-A-209ENST00000638375 975 ntBASIC17.41■□□□□ 0.38
CLCF1Q9UBD9 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC17.41■□□□□ 0.38
CLCF1Q9UBD9 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CLCF1Q9UBD9 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
CLCF1Q9UBD9 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
CLCF1Q9UBD9 AC079598.2-202ENST00000546624 1451 ntBASIC17.41■□□□□ 0.38
CLCF1Q9UBD9 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC17.41■□□□□ 0.38
CLCF1Q9UBD9 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
CLCF1Q9UBD9 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC17.41■□□□□ 0.38
CLCF1Q9UBD9 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CLCF1Q9UBD9 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC17.41■□□□□ 0.38
CLCF1Q9UBD9 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CLCF1Q9UBD9 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CLCF1Q9UBD9 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CLCF1Q9UBD9 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CLCF1Q9UBD9 KRT8P8-201ENST00000434750 1448 ntBASIC17.4■□□□□ 0.38
CLCF1Q9UBD9 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC17.4■□□□□ 0.38
CLCF1Q9UBD9 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
CLCF1Q9UBD9 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC17.4■□□□□ 0.38
CLCF1Q9UBD9 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC17.4■□□□□ 0.38
CLCF1Q9UBD9 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
CLCF1Q9UBD9 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC17.4■□□□□ 0.38
CLCF1Q9UBD9 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
CLCF1Q9UBD9 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC17.4■□□□□ 0.38
CLCF1Q9UBD9 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC17.4■□□□□ 0.38
CLCF1Q9UBD9 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC17.4■□□□□ 0.38
CLCF1Q9UBD9 AP000525.1-201ENST00000608286 694 ntBASIC17.4■□□□□ 0.38
CLCF1Q9UBD9 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
CLCF1Q9UBD9 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
CLCF1Q9UBD9 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC17.4■□□□□ 0.38
CLCF1Q9UBD9 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
CLCF1Q9UBD9 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 37 ms