Protein–RNA interactions for Protein: Q9NWM3

CUEDC1, CUE domain-containing protein 1, humanhuman

Predicted RBP Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUEDC1Q9NWM3 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC18.95■□□□□ 0.62
CUEDC1Q9NWM3 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC18.95■□□□□ 0.62
CUEDC1Q9NWM3 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CUEDC1Q9NWM3 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CUEDC1Q9NWM3 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC18.94■□□□□ 0.62
CUEDC1Q9NWM3 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC18.94■□□□□ 0.62
CUEDC1Q9NWM3 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CUEDC1Q9NWM3 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CUEDC1Q9NWM3 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC18.94■□□□□ 0.62
CUEDC1Q9NWM3 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CUEDC1Q9NWM3 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC18.94■□□□□ 0.62
CUEDC1Q9NWM3 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC18.94■□□□□ 0.62
CUEDC1Q9NWM3 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
CUEDC1Q9NWM3 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CUEDC1Q9NWM3 PEX7-202ENST00000367756 680 ntTSL 3 BASIC18.94■□□□□ 0.62
CUEDC1Q9NWM3 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CUEDC1Q9NWM3 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC18.94■□□□□ 0.62
CUEDC1Q9NWM3 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC18.94■□□□□ 0.62
CUEDC1Q9NWM3 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
CUEDC1Q9NWM3 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
CUEDC1Q9NWM3 RN7SL471P-201ENST00000580476 299 ntBASIC18.94■□□□□ 0.62
CUEDC1Q9NWM3 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC18.94■□□□□ 0.62
CUEDC1Q9NWM3 AC010331.1-201ENST00000611423 582 ntBASIC18.94■□□□□ 0.62
CUEDC1Q9NWM3 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
CUEDC1Q9NWM3 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC18.94■□□□□ 0.62
CUEDC1Q9NWM3 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CUEDC1Q9NWM3 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CUEDC1Q9NWM3 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CUEDC1Q9NWM3 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC18.94■□□□□ 0.62
CUEDC1Q9NWM3 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC18.94■□□□□ 0.62
CUEDC1Q9NWM3 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC18.94■□□□□ 0.62
CUEDC1Q9NWM3 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC18.94■□□□□ 0.62
CUEDC1Q9NWM3 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CUEDC1Q9NWM3 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC18.93■□□□□ 0.62
CUEDC1Q9NWM3 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
CUEDC1Q9NWM3 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CUEDC1Q9NWM3 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
CUEDC1Q9NWM3 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC18.93■□□□□ 0.62
CUEDC1Q9NWM3 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
CUEDC1Q9NWM3 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC18.93■□□□□ 0.62
CUEDC1Q9NWM3 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC18.93■□□□□ 0.62
CUEDC1Q9NWM3 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC18.93■□□□□ 0.62
CUEDC1Q9NWM3 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC18.93■□□□□ 0.62
CUEDC1Q9NWM3 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC18.93■□□□□ 0.62
CUEDC1Q9NWM3 GXYLT1P3-201ENST00000453058 1193 ntBASIC18.93■□□□□ 0.62
CUEDC1Q9NWM3 PRKY-204ENST00000533551 1019 ntBASIC18.93■□□□□ 0.62
CUEDC1Q9NWM3 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
CUEDC1Q9NWM3 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC18.93■□□□□ 0.62
CUEDC1Q9NWM3 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC18.93■□□□□ 0.62
CUEDC1Q9NWM3 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
CUEDC1Q9NWM3 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC18.93■□□□□ 0.62
CUEDC1Q9NWM3 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
CUEDC1Q9NWM3 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CUEDC1Q9NWM3 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC18.93■□□□□ 0.62
CUEDC1Q9NWM3 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CUEDC1Q9NWM3 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC18.93■□□□□ 0.62
CUEDC1Q9NWM3 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC18.93■□□□□ 0.62
CUEDC1Q9NWM3 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CUEDC1Q9NWM3 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CUEDC1Q9NWM3 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC18.93■□□□□ 0.62
CUEDC1Q9NWM3 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC18.92■□□□□ 0.62
CUEDC1Q9NWM3 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
CUEDC1Q9NWM3 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC18.92■□□□□ 0.62
CUEDC1Q9NWM3 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CUEDC1Q9NWM3 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
CUEDC1Q9NWM3 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CUEDC1Q9NWM3 AP006587.1-201ENST00000534129 1502 ntBASIC18.92■□□□□ 0.62
CUEDC1Q9NWM3 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CUEDC1Q9NWM3 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
CUEDC1Q9NWM3 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
CUEDC1Q9NWM3 TREX2-204ENST00000370212 861 ntTSL 5 BASIC18.92■□□□□ 0.62
CUEDC1Q9NWM3 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
CUEDC1Q9NWM3 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC18.92■□□□□ 0.62
CUEDC1Q9NWM3 SERF2-207ENST00000409614 582 ntTSL 2 BASIC18.92■□□□□ 0.62
CUEDC1Q9NWM3 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC18.92■□□□□ 0.62
CUEDC1Q9NWM3 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC18.92■□□□□ 0.62
CUEDC1Q9NWM3 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC18.92■□□□□ 0.62
CUEDC1Q9NWM3 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
CUEDC1Q9NWM3 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC18.92■□□□□ 0.62
CUEDC1Q9NWM3 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CUEDC1Q9NWM3 LINC01023-201ENST00000606054 436 ntBASIC18.92■□□□□ 0.62
CUEDC1Q9NWM3 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
CUEDC1Q9NWM3 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC18.92■□□□□ 0.62
CUEDC1Q9NWM3 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CUEDC1Q9NWM3 ADM-207ENST00000530439 1839 ntTSL 2 BASIC18.92■□□□□ 0.62
CUEDC1Q9NWM3 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
CUEDC1Q9NWM3 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
CUEDC1Q9NWM3 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
CUEDC1Q9NWM3 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC18.92■□□□□ 0.62
CUEDC1Q9NWM3 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CUEDC1Q9NWM3 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
CUEDC1Q9NWM3 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
CUEDC1Q9NWM3 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC18.91■□□□□ 0.62
CUEDC1Q9NWM3 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
CUEDC1Q9NWM3 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC18.91■□□□□ 0.62
CUEDC1Q9NWM3 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
CUEDC1Q9NWM3 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
CUEDC1Q9NWM3 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
CUEDC1Q9NWM3 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
CUEDC1Q9NWM3 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC18.91■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 34.5 ms