Protein–RNA interactions for Protein: Q9NQI0

DDX4, Probable ATP-dependent RNA helicase DDX4, humanhuman

Known RBP Predictions only

Length 724 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX4Q9NQI0 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
DDX4Q9NQI0 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC23.18■■□□□ 1.3
DDX4Q9NQI0 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC23.18■■□□□ 1.3
DDX4Q9NQI0 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC23.18■■□□□ 1.3
DDX4Q9NQI0 AC092667.1-201ENST00000434301 2586 ntBASIC23.17■■□□□ 1.3
DDX4Q9NQI0 AC096733.2-201ENST00000609937 1394 ntBASIC23.17■■□□□ 1.3
DDX4Q9NQI0 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC23.17■■□□□ 1.3
DDX4Q9NQI0 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC23.17■■□□□ 1.3
DDX4Q9NQI0 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC23.17■■□□□ 1.3
DDX4Q9NQI0 ARMC10P1-201ENST00000313754 855 ntBASIC23.17■■□□□ 1.3
DDX4Q9NQI0 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC23.17■■□□□ 1.3
DDX4Q9NQI0 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
DDX4Q9NQI0 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC23.17■■□□□ 1.3
DDX4Q9NQI0 MFAP1P1-201ENST00000442257 1255 ntBASIC23.17■■□□□ 1.3
DDX4Q9NQI0 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
DDX4Q9NQI0 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC23.17■■□□□ 1.3
DDX4Q9NQI0 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC23.17■■□□□ 1.3
DDX4Q9NQI0 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC23.17■■□□□ 1.3
DDX4Q9NQI0 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC23.17■■□□□ 1.3
DDX4Q9NQI0 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC23.17■■□□□ 1.3
DDX4Q9NQI0 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC23.17■■□□□ 1.3
DDX4Q9NQI0 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
DDX4Q9NQI0 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
DDX4Q9NQI0 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
DDX4Q9NQI0 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
DDX4Q9NQI0 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC23.17■■□□□ 1.3
DDX4Q9NQI0 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
DDX4Q9NQI0 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC23.16■■□□□ 1.3
DDX4Q9NQI0 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
DDX4Q9NQI0 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC23.16■■□□□ 1.3
DDX4Q9NQI0 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC23.16■■□□□ 1.3
DDX4Q9NQI0 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC23.16■■□□□ 1.3
DDX4Q9NQI0 FAM207BP-201ENST00000447172 505 ntBASIC23.16■■□□□ 1.3
DDX4Q9NQI0 DUX4L26-201ENST00000489078 1255 ntBASIC23.16■■□□□ 1.3
DDX4Q9NQI0 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC23.16■■□□□ 1.3
DDX4Q9NQI0 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC23.16■■□□□ 1.3
DDX4Q9NQI0 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC23.16■■□□□ 1.3
DDX4Q9NQI0 AL590326.2-201ENST00000625139 305 ntBASIC23.16■■□□□ 1.3
DDX4Q9NQI0 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC23.16■■□□□ 1.3
DDX4Q9NQI0 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
DDX4Q9NQI0 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC23.16■■□□□ 1.3
DDX4Q9NQI0 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
DDX4Q9NQI0 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
DDX4Q9NQI0 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
DDX4Q9NQI0 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC23.15■■□□□ 1.3
DDX4Q9NQI0 GOLGA2P11-201ENST00000562660 1621 ntBASIC23.15■■□□□ 1.3
DDX4Q9NQI0 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
DDX4Q9NQI0 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
DDX4Q9NQI0 NT5C-211ENST00000582170 653 ntTSL 3 BASIC23.15■■□□□ 1.3
DDX4Q9NQI0 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC23.15■■□□□ 1.3
DDX4Q9NQI0 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC23.15■■□□□ 1.3
DDX4Q9NQI0 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
DDX4Q9NQI0 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
DDX4Q9NQI0 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
DDX4Q9NQI0 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC23.15■■□□□ 1.3
DDX4Q9NQI0 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.3
DDX4Q9NQI0 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC23.14■■□□□ 1.3
DDX4Q9NQI0 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC23.14■■□□□ 1.3
DDX4Q9NQI0 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC23.14■■□□□ 1.3
DDX4Q9NQI0 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC23.14■■□□□ 1.3
DDX4Q9NQI0 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC23.14■■□□□ 1.3
DDX4Q9NQI0 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.3
DDX4Q9NQI0 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC23.14■■□□□ 1.3
DDX4Q9NQI0 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC23.14■■□□□ 1.29
DDX4Q9NQI0 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
DDX4Q9NQI0 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC23.14■■□□□ 1.29
DDX4Q9NQI0 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC23.14■■□□□ 1.29
DDX4Q9NQI0 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
DDX4Q9NQI0 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC23.14■■□□□ 1.29
DDX4Q9NQI0 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC23.14■■□□□ 1.29
DDX4Q9NQI0 NME3-204ENST00000563498 920 ntTSL 2 BASIC23.14■■□□□ 1.29
DDX4Q9NQI0 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC23.14■■□□□ 1.29
DDX4Q9NQI0 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC23.14■■□□□ 1.29
DDX4Q9NQI0 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
DDX4Q9NQI0 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
DDX4Q9NQI0 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC23.14■■□□□ 1.29
DDX4Q9NQI0 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC23.14■■□□□ 1.29
DDX4Q9NQI0 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC23.14■■□□□ 1.29
DDX4Q9NQI0 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
DDX4Q9NQI0 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
DDX4Q9NQI0 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
DDX4Q9NQI0 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC23.13■■□□□ 1.29
DDX4Q9NQI0 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
DDX4Q9NQI0 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
DDX4Q9NQI0 HIST1H2APS4-201ENST00000362070 348 ntBASIC23.13■■□□□ 1.29
DDX4Q9NQI0 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC23.13■■□□□ 1.29
DDX4Q9NQI0 NME1-207ENST00000480143 964 ntTSL 2 BASIC23.13■■□□□ 1.29
DDX4Q9NQI0 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC23.13■■□□□ 1.29
DDX4Q9NQI0 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
DDX4Q9NQI0 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC23.13■■□□□ 1.29
DDX4Q9NQI0 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
DDX4Q9NQI0 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
DDX4Q9NQI0 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
DDX4Q9NQI0 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
DDX4Q9NQI0 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
DDX4Q9NQI0 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC23.13■■□□□ 1.29
DDX4Q9NQI0 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC23.13■■□□□ 1.29
DDX4Q9NQI0 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
DDX4Q9NQI0 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC23.12■■□□□ 1.29
DDX4Q9NQI0 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
Retrieved 100 of 98,524 protein–RNA pairs in 36.3 ms