Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC24.95■■□□□ 1.58
USP42Q9H9J4 AC096733.2-201ENST00000609937 1394 ntBASIC24.95■■□□□ 1.58
USP42Q9H9J4 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC24.95■■□□□ 1.58
USP42Q9H9J4 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC24.95■■□□□ 1.58
USP42Q9H9J4 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC24.95■■□□□ 1.58
USP42Q9H9J4 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC24.95■■□□□ 1.58
USP42Q9H9J4 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC24.95■■□□□ 1.58
USP42Q9H9J4 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC24.95■■□□□ 1.58
USP42Q9H9J4 AC018553.1-201ENST00000616682 1458 ntBASIC24.95■■□□□ 1.58
USP42Q9H9J4 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC24.95■■□□□ 1.58
USP42Q9H9J4 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC24.94■■□□□ 1.58
USP42Q9H9J4 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC24.94■■□□□ 1.58
USP42Q9H9J4 HIST1H2APS4-201ENST00000362070 348 ntBASIC24.94■■□□□ 1.58
USP42Q9H9J4 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC24.94■■□□□ 1.58
USP42Q9H9J4 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC24.94■■□□□ 1.58
USP42Q9H9J4 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC24.94■■□□□ 1.58
USP42Q9H9J4 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC24.94■■□□□ 1.58
USP42Q9H9J4 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC24.94■■□□□ 1.58
USP42Q9H9J4 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC24.94■■□□□ 1.58
USP42Q9H9J4 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC24.94■■□□□ 1.58
USP42Q9H9J4 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC24.94■■□□□ 1.58
USP42Q9H9J4 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC24.94■■□□□ 1.58
USP42Q9H9J4 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC24.94■■□□□ 1.58
USP42Q9H9J4 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC24.94■■□□□ 1.58
USP42Q9H9J4 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC24.94■■□□□ 1.58
USP42Q9H9J4 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC24.94■■□□□ 1.58
USP42Q9H9J4 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC24.94■■□□□ 1.58
USP42Q9H9J4 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC24.94■■□□□ 1.58
USP42Q9H9J4 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC24.94■■□□□ 1.58
USP42Q9H9J4 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
USP42Q9H9J4 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC24.93■■□□□ 1.58
USP42Q9H9J4 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
USP42Q9H9J4 GOLGA6L3-201ENST00000507199 1679 ntBASIC24.93■■□□□ 1.58
USP42Q9H9J4 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
USP42Q9H9J4 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
USP42Q9H9J4 RNF152P1-201ENST00000397754 604 ntBASIC24.93■■□□□ 1.58
USP42Q9H9J4 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC24.93■■□□□ 1.58
USP42Q9H9J4 CLN6-204ENST00000564752 900 ntTSL 3 BASIC24.93■■□□□ 1.58
USP42Q9H9J4 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC24.93■■□□□ 1.58
USP42Q9H9J4 AC011298.2-201ENST00000617989 482 ntBASIC24.93■■□□□ 1.58
USP42Q9H9J4 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC24.93■■□□□ 1.58
USP42Q9H9J4 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC24.93■■□□□ 1.58
USP42Q9H9J4 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC24.93■■□□□ 1.58
USP42Q9H9J4 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC24.93■■□□□ 1.58
USP42Q9H9J4 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
USP42Q9H9J4 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
USP42Q9H9J4 AL157384.1-201ENST00000445995 2473 ntBASIC24.93■■□□□ 1.58
USP42Q9H9J4 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC24.93■■□□□ 1.58
USP42Q9H9J4 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC24.93■■□□□ 1.58
USP42Q9H9J4 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC24.92■■□□□ 1.58
USP42Q9H9J4 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC24.92■■□□□ 1.58
USP42Q9H9J4 YBX1P2-201ENST00000489612 999 ntBASIC24.92■■□□□ 1.58
USP42Q9H9J4 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC24.92■■□□□ 1.58
USP42Q9H9J4 HLA-A-209ENST00000638375 975 ntBASIC24.92■■□□□ 1.58
USP42Q9H9J4 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC24.92■■□□□ 1.58
USP42Q9H9J4 MED25-212ENST00000618715 1467 ntTSL 5 BASIC24.92■■□□□ 1.58
USP42Q9H9J4 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC24.92■■□□□ 1.58
USP42Q9H9J4 AC020907.5-201ENST00000624372 1936 ntBASIC24.92■■□□□ 1.58
USP42Q9H9J4 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC24.92■■□□□ 1.58
USP42Q9H9J4 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC24.92■■□□□ 1.58
USP42Q9H9J4 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC24.92■■□□□ 1.58
USP42Q9H9J4 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC24.92■■□□□ 1.58
USP42Q9H9J4 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC24.92■■□□□ 1.58
USP42Q9H9J4 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC24.92■■□□□ 1.58
USP42Q9H9J4 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC24.91■■□□□ 1.58
USP42Q9H9J4 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC24.91■■□□□ 1.58
USP42Q9H9J4 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC24.91■■□□□ 1.58
USP42Q9H9J4 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC24.91■■□□□ 1.58
USP42Q9H9J4 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC24.91■■□□□ 1.58
USP42Q9H9J4 MFAP1P1-201ENST00000442257 1255 ntBASIC24.91■■□□□ 1.58
USP42Q9H9J4 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC24.91■■□□□ 1.58
USP42Q9H9J4 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC24.91■■□□□ 1.58
USP42Q9H9J4 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC24.91■■□□□ 1.58
USP42Q9H9J4 CYGB-204ENST00000589342 815 ntTSL 3 BASIC24.91■■□□□ 1.58
USP42Q9H9J4 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC24.91■■□□□ 1.58
USP42Q9H9J4 AC116562.4-202ENST00000641738 218 ntBASIC24.91■■□□□ 1.58
USP42Q9H9J4 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC24.91■■□□□ 1.58
USP42Q9H9J4 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC24.91■■□□□ 1.58
USP42Q9H9J4 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC24.91■■□□□ 1.58
USP42Q9H9J4 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC24.91■■□□□ 1.58
USP42Q9H9J4 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC24.91■■□□□ 1.58
USP42Q9H9J4 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC24.9■■□□□ 1.58
USP42Q9H9J4 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC24.9■■□□□ 1.58
USP42Q9H9J4 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC24.9■■□□□ 1.58
USP42Q9H9J4 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC24.9■■□□□ 1.58
USP42Q9H9J4 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC24.9■■□□□ 1.58
USP42Q9H9J4 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC24.9■■□□□ 1.58
USP42Q9H9J4 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC24.9■■□□□ 1.58
USP42Q9H9J4 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC24.9■■□□□ 1.58
USP42Q9H9J4 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC24.9■■□□□ 1.58
USP42Q9H9J4 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC24.9■■□□□ 1.58
USP42Q9H9J4 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
USP42Q9H9J4 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC24.9■■□□□ 1.58
USP42Q9H9J4 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
USP42Q9H9J4 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC24.9■■□□□ 1.58
USP42Q9H9J4 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC24.9■■□□□ 1.58
USP42Q9H9J4 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC24.9■■□□□ 1.58
USP42Q9H9J4 DPP3P2-201ENST00000416030 1696 ntBASIC24.9■■□□□ 1.58
USP42Q9H9J4 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
USP42Q9H9J4 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC24.9■■□□□ 1.58
Retrieved 100 of 98,524 protein–RNA pairs in 31.2 ms