Protein–RNA interactions for Protein: Q9H1E3

NUCKS1, Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1, humanhuman

Known RBP Predictions only

Length 243 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUCKS1Q9H1E3 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC21.21■□□□□ 0.99
NUCKS1Q9H1E3 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
NUCKS1Q9H1E3 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
NUCKS1Q9H1E3 AC133041.1-202ENST00000642053 222 ntBASIC21.21■□□□□ 0.99
NUCKS1Q9H1E3 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC21.21■□□□□ 0.99
NUCKS1Q9H1E3 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC21.21■□□□□ 0.99
NUCKS1Q9H1E3 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC21.2■□□□□ 0.99
NUCKS1Q9H1E3 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
NUCKS1Q9H1E3 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC21.2■□□□□ 0.98
NUCKS1Q9H1E3 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC21.2■□□□□ 0.98
NUCKS1Q9H1E3 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC21.2■□□□□ 0.98
NUCKS1Q9H1E3 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.98
NUCKS1Q9H1E3 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
NUCKS1Q9H1E3 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC21.2■□□□□ 0.98
NUCKS1Q9H1E3 AC073210.2-201ENST00000430369 194 ntBASIC21.2■□□□□ 0.98
NUCKS1Q9H1E3 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC21.2■□□□□ 0.98
NUCKS1Q9H1E3 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC21.2■□□□□ 0.98
NUCKS1Q9H1E3 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC21.2■□□□□ 0.98
NUCKS1Q9H1E3 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
NUCKS1Q9H1E3 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC21.2■□□□□ 0.98
NUCKS1Q9H1E3 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC21.2■□□□□ 0.98
NUCKS1Q9H1E3 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.98
NUCKS1Q9H1E3 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
NUCKS1Q9H1E3 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
NUCKS1Q9H1E3 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
NUCKS1Q9H1E3 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
NUCKS1Q9H1E3 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
NUCKS1Q9H1E3 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC21.2■□□□□ 0.98
NUCKS1Q9H1E3 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC21.19■□□□□ 0.98
NUCKS1Q9H1E3 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
NUCKS1Q9H1E3 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC21.19■□□□□ 0.98
NUCKS1Q9H1E3 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
NUCKS1Q9H1E3 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
NUCKS1Q9H1E3 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
NUCKS1Q9H1E3 LSM12P1-201ENST00000411836 588 ntBASIC21.19■□□□□ 0.98
NUCKS1Q9H1E3 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC21.19■□□□□ 0.98
NUCKS1Q9H1E3 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC21.19■□□□□ 0.98
NUCKS1Q9H1E3 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC21.19■□□□□ 0.98
NUCKS1Q9H1E3 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
NUCKS1Q9H1E3 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
NUCKS1Q9H1E3 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC21.19■□□□□ 0.98
NUCKS1Q9H1E3 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC21.19■□□□□ 0.98
NUCKS1Q9H1E3 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC21.19■□□□□ 0.98
NUCKS1Q9H1E3 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC21.19■□□□□ 0.98
NUCKS1Q9H1E3 AC116351.2-201ENST00000606540 1585 ntBASIC21.19■□□□□ 0.98
NUCKS1Q9H1E3 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC21.19■□□□□ 0.98
NUCKS1Q9H1E3 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
NUCKS1Q9H1E3 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
NUCKS1Q9H1E3 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC21.18■□□□□ 0.98
NUCKS1Q9H1E3 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC21.18■□□□□ 0.98
NUCKS1Q9H1E3 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
NUCKS1Q9H1E3 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
NUCKS1Q9H1E3 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
NUCKS1Q9H1E3 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC21.18■□□□□ 0.98
NUCKS1Q9H1E3 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
NUCKS1Q9H1E3 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
NUCKS1Q9H1E3 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
NUCKS1Q9H1E3 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.98
NUCKS1Q9H1E3 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
NUCKS1Q9H1E3 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC21.18■□□□□ 0.98
NUCKS1Q9H1E3 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC21.18■□□□□ 0.98
NUCKS1Q9H1E3 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
NUCKS1Q9H1E3 RGMA-211ENST00000557420 989 ntTSL 3 BASIC21.18■□□□□ 0.98
NUCKS1Q9H1E3 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC21.18■□□□□ 0.98
NUCKS1Q9H1E3 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
NUCKS1Q9H1E3 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
NUCKS1Q9H1E3 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
NUCKS1Q9H1E3 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
NUCKS1Q9H1E3 AC018553.1-201ENST00000616682 1458 ntBASIC21.18■□□□□ 0.98
NUCKS1Q9H1E3 EML3-217ENST00000531557 2509 ntTSL 5 BASIC21.18■□□□□ 0.98
NUCKS1Q9H1E3 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
NUCKS1Q9H1E3 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC21.18■□□□□ 0.98
NUCKS1Q9H1E3 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
NUCKS1Q9H1E3 LINC01465-201ENST00000408887 1940 ntBASIC21.17■□□□□ 0.98
NUCKS1Q9H1E3 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC21.17■□□□□ 0.98
NUCKS1Q9H1E3 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
NUCKS1Q9H1E3 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC21.17■□□□□ 0.98
NUCKS1Q9H1E3 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC21.17■□□□□ 0.98
NUCKS1Q9H1E3 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
NUCKS1Q9H1E3 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC21.17■□□□□ 0.98
NUCKS1Q9H1E3 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
NUCKS1Q9H1E3 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
NUCKS1Q9H1E3 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
NUCKS1Q9H1E3 DUSP5P2-201ENST00000426873 1033 ntBASIC21.17■□□□□ 0.98
NUCKS1Q9H1E3 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC21.17■□□□□ 0.98
NUCKS1Q9H1E3 OR2A1-AS1-201ENST00000462305 773 ntBASIC21.17■□□□□ 0.98
NUCKS1Q9H1E3 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC21.17■□□□□ 0.98
NUCKS1Q9H1E3 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC21.17■□□□□ 0.98
NUCKS1Q9H1E3 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
NUCKS1Q9H1E3 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC21.17■□□□□ 0.98
NUCKS1Q9H1E3 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC21.17■□□□□ 0.98
NUCKS1Q9H1E3 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
NUCKS1Q9H1E3 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
NUCKS1Q9H1E3 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC21.17■□□□□ 0.98
NUCKS1Q9H1E3 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC21.17■□□□□ 0.98
NUCKS1Q9H1E3 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC21.17■□□□□ 0.98
NUCKS1Q9H1E3 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
NUCKS1Q9H1E3 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC21.17■□□□□ 0.98
NUCKS1Q9H1E3 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
NUCKS1Q9H1E3 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 22 ms