Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
TRIM56Q9BRZ2 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC19.94■□□□□ 0.78
TRIM56Q9BRZ2 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC19.94■□□□□ 0.78
TRIM56Q9BRZ2 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC19.94■□□□□ 0.78
TRIM56Q9BRZ2 GPX1P1-201ENST00000388829 606 ntBASIC19.94■□□□□ 0.78
TRIM56Q9BRZ2 LSM12P1-201ENST00000411836 588 ntBASIC19.94■□□□□ 0.78
TRIM56Q9BRZ2 BX276092.2-201ENST00000417668 665 ntBASIC19.94■□□□□ 0.78
TRIM56Q9BRZ2 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC19.94■□□□□ 0.78
TRIM56Q9BRZ2 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
TRIM56Q9BRZ2 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
TRIM56Q9BRZ2 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC19.94■□□□□ 0.78
TRIM56Q9BRZ2 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC19.94■□□□□ 0.78
TRIM56Q9BRZ2 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
TRIM56Q9BRZ2 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC19.94■□□□□ 0.78
TRIM56Q9BRZ2 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
TRIM56Q9BRZ2 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
TRIM56Q9BRZ2 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC19.94■□□□□ 0.78
TRIM56Q9BRZ2 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC19.94■□□□□ 0.78
TRIM56Q9BRZ2 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC19.94■□□□□ 0.78
TRIM56Q9BRZ2 PHGDH-210ENST00000641115 1638 ntBASIC19.94■□□□□ 0.78
TRIM56Q9BRZ2 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC19.94■□□□□ 0.78
TRIM56Q9BRZ2 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC19.94■□□□□ 0.78
TRIM56Q9BRZ2 AC018445.3-201ENST00000624177 1945 ntBASIC19.94■□□□□ 0.78
TRIM56Q9BRZ2 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC19.94■□□□□ 0.78
TRIM56Q9BRZ2 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC19.94■□□□□ 0.78
TRIM56Q9BRZ2 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
TRIM56Q9BRZ2 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
TRIM56Q9BRZ2 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC19.93■□□□□ 0.78
TRIM56Q9BRZ2 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC19.93■□□□□ 0.78
TRIM56Q9BRZ2 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC19.93■□□□□ 0.78
TRIM56Q9BRZ2 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC19.93■□□□□ 0.78
TRIM56Q9BRZ2 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC19.93■□□□□ 0.78
TRIM56Q9BRZ2 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
TRIM56Q9BRZ2 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
TRIM56Q9BRZ2 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
TRIM56Q9BRZ2 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
TRIM56Q9BRZ2 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC19.93■□□□□ 0.78
TRIM56Q9BRZ2 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC19.93■□□□□ 0.78
TRIM56Q9BRZ2 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
TRIM56Q9BRZ2 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC19.93■□□□□ 0.78
TRIM56Q9BRZ2 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC19.93■□□□□ 0.78
TRIM56Q9BRZ2 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
TRIM56Q9BRZ2 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC19.92■□□□□ 0.78
TRIM56Q9BRZ2 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
TRIM56Q9BRZ2 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC19.92■□□□□ 0.78
TRIM56Q9BRZ2 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC19.92■□□□□ 0.78
TRIM56Q9BRZ2 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC19.92■□□□□ 0.78
TRIM56Q9BRZ2 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
TRIM56Q9BRZ2 HLA-G-202ENST00000376815 851 ntBASIC19.92■□□□□ 0.78
TRIM56Q9BRZ2 HLA-G-203ENST00000376818 1127 ntBASIC19.92■□□□□ 0.78
TRIM56Q9BRZ2 METTL15-202ENST00000403099 795 ntTSL 5 BASIC19.92■□□□□ 0.78
TRIM56Q9BRZ2 AC026185.1-201ENST00000445748 174 ntBASIC19.92■□□□□ 0.78
TRIM56Q9BRZ2 OR2A1-AS1-201ENST00000462305 773 ntBASIC19.92■□□□□ 0.78
TRIM56Q9BRZ2 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC19.92■□□□□ 0.78
TRIM56Q9BRZ2 AF201337.1-201ENST00000520239 748 ntBASIC19.92■□□□□ 0.78
TRIM56Q9BRZ2 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC19.92■□□□□ 0.78
TRIM56Q9BRZ2 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC19.92■□□□□ 0.78
TRIM56Q9BRZ2 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC19.92■□□□□ 0.78
TRIM56Q9BRZ2 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC19.92■□□□□ 0.78
TRIM56Q9BRZ2 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC19.92■□□□□ 0.78
TRIM56Q9BRZ2 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
TRIM56Q9BRZ2 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC19.92■□□□□ 0.78
TRIM56Q9BRZ2 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
TRIM56Q9BRZ2 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
TRIM56Q9BRZ2 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC19.92■□□□□ 0.78
TRIM56Q9BRZ2 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC19.92■□□□□ 0.78
TRIM56Q9BRZ2 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
TRIM56Q9BRZ2 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC19.92■□□□□ 0.78
TRIM56Q9BRZ2 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC19.91■□□□□ 0.78
TRIM56Q9BRZ2 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
TRIM56Q9BRZ2 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC19.91■□□□□ 0.78
TRIM56Q9BRZ2 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC19.91■□□□□ 0.78
TRIM56Q9BRZ2 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
TRIM56Q9BRZ2 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
TRIM56Q9BRZ2 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC19.91■□□□□ 0.78
TRIM56Q9BRZ2 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
TRIM56Q9BRZ2 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
TRIM56Q9BRZ2 AC023632.3-201ENST00000521633 145 ntBASIC19.91■□□□□ 0.78
TRIM56Q9BRZ2 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC19.91■□□□□ 0.78
TRIM56Q9BRZ2 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC19.91■□□□□ 0.78
TRIM56Q9BRZ2 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
TRIM56Q9BRZ2 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC19.91■□□□□ 0.78
TRIM56Q9BRZ2 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
TRIM56Q9BRZ2 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
TRIM56Q9BRZ2 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
TRIM56Q9BRZ2 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
TRIM56Q9BRZ2 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC19.91■□□□□ 0.78
TRIM56Q9BRZ2 AP001271.2-201ENST00000624018 1556 ntBASIC19.91■□□□□ 0.78
TRIM56Q9BRZ2 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
TRIM56Q9BRZ2 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC19.91■□□□□ 0.78
TRIM56Q9BRZ2 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
TRIM56Q9BRZ2 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
TRIM56Q9BRZ2 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
TRIM56Q9BRZ2 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC19.9■□□□□ 0.78
TRIM56Q9BRZ2 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC19.9■□□□□ 0.78
TRIM56Q9BRZ2 PTGES2-AS1-201ENST00000443493 2100 ntBASIC19.9■□□□□ 0.78
TRIM56Q9BRZ2 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC19.9■□□□□ 0.78
TRIM56Q9BRZ2 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC19.9■□□□□ 0.78
TRIM56Q9BRZ2 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
TRIM56Q9BRZ2 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 22.3 ms