Protein–RNA interactions for Protein: Q99742

NPAS1, Neuronal PAS domain-containing protein 1, humanhuman

Predictions only

Length 590 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS1Q99742 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC17.84■□□□□ 0.45
NPAS1Q99742 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
NPAS1Q99742 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
NPAS1Q99742 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC17.84■□□□□ 0.45
NPAS1Q99742 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
NPAS1Q99742 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC17.84■□□□□ 0.45
NPAS1Q99742 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC17.84■□□□□ 0.45
NPAS1Q99742 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
NPAS1Q99742 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
NPAS1Q99742 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
NPAS1Q99742 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
NPAS1Q99742 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
NPAS1Q99742 PWWP2AP1-201ENST00000429776 2273 ntBASIC17.83■□□□□ 0.45
NPAS1Q99742 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC17.83■□□□□ 0.45
NPAS1Q99742 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC17.83■□□□□ 0.44
NPAS1Q99742 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC17.83■□□□□ 0.44
NPAS1Q99742 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
NPAS1Q99742 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.44
NPAS1Q99742 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.44
NPAS1Q99742 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
NPAS1Q99742 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC17.83■□□□□ 0.44
NPAS1Q99742 KRASP1-201ENST00000407852 552 ntBASIC17.83■□□□□ 0.44
NPAS1Q99742 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC17.83■□□□□ 0.44
NPAS1Q99742 RPPH1-201ENST00000516869 333 ntBASIC17.83■□□□□ 0.44
NPAS1Q99742 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC17.83■□□□□ 0.44
NPAS1Q99742 AC124016.1-201ENST00000609552 612 ntBASIC17.83■□□□□ 0.44
NPAS1Q99742 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.44
NPAS1Q99742 AL359736.2-201ENST00000621992 437 ntBASIC17.83■□□□□ 0.44
NPAS1Q99742 TMEM191A-211ENST00000637163 1067 ntBASIC17.83■□□□□ 0.44
NPAS1Q99742 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.44
NPAS1Q99742 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
NPAS1Q99742 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC17.83■□□□□ 0.44
NPAS1Q99742 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC17.83■□□□□ 0.44
NPAS1Q99742 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC17.83■□□□□ 0.44
NPAS1Q99742 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
NPAS1Q99742 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
NPAS1Q99742 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
NPAS1Q99742 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC17.82■□□□□ 0.44
NPAS1Q99742 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
NPAS1Q99742 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC17.82■□□□□ 0.44
NPAS1Q99742 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
NPAS1Q99742 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC17.82■□□□□ 0.44
NPAS1Q99742 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC17.82■□□□□ 0.44
NPAS1Q99742 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC17.82■□□□□ 0.44
NPAS1Q99742 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC17.82■□□□□ 0.44
NPAS1Q99742 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC17.82■□□□□ 0.44
NPAS1Q99742 TK2-204ENST00000525974 1178 ntTSL 2 BASIC17.82■□□□□ 0.44
NPAS1Q99742 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC17.82■□□□□ 0.44
NPAS1Q99742 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
NPAS1Q99742 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC17.82■□□□□ 0.44
NPAS1Q99742 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
NPAS1Q99742 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC17.82■□□□□ 0.44
NPAS1Q99742 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
NPAS1Q99742 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC17.82■□□□□ 0.44
NPAS1Q99742 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
NPAS1Q99742 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC17.82■□□□□ 0.44
NPAS1Q99742 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
NPAS1Q99742 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
NPAS1Q99742 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC17.82■□□□□ 0.44
NPAS1Q99742 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
NPAS1Q99742 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC17.82■□□□□ 0.44
NPAS1Q99742 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
NPAS1Q99742 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC17.81■□□□□ 0.44
NPAS1Q99742 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC17.81■□□□□ 0.44
NPAS1Q99742 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC17.81■□□□□ 0.44
NPAS1Q99742 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC17.81■□□□□ 0.44
NPAS1Q99742 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
NPAS1Q99742 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC17.81■□□□□ 0.44
NPAS1Q99742 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC17.81■□□□□ 0.44
NPAS1Q99742 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
NPAS1Q99742 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC17.81■□□□□ 0.44
NPAS1Q99742 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
NPAS1Q99742 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
NPAS1Q99742 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
NPAS1Q99742 ISG20-202ENST00000379224 540 ntTSL 3 BASIC17.81■□□□□ 0.44
NPAS1Q99742 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC17.81■□□□□ 0.44
NPAS1Q99742 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC17.81■□□□□ 0.44
NPAS1Q99742 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC17.81■□□□□ 0.44
NPAS1Q99742 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC17.81■□□□□ 0.44
NPAS1Q99742 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC17.81■□□□□ 0.44
NPAS1Q99742 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC17.81■□□□□ 0.44
NPAS1Q99742 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC17.81■□□□□ 0.44
NPAS1Q99742 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
NPAS1Q99742 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
NPAS1Q99742 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
NPAS1Q99742 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC17.81■□□□□ 0.44
NPAS1Q99742 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC17.81■□□□□ 0.44
NPAS1Q99742 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC17.81■□□□□ 0.44
NPAS1Q99742 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
NPAS1Q99742 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
NPAS1Q99742 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
NPAS1Q99742 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
NPAS1Q99742 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC17.81■□□□□ 0.44
NPAS1Q99742 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
NPAS1Q99742 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
NPAS1Q99742 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
NPAS1Q99742 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC17.8■□□□□ 0.44
NPAS1Q99742 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
NPAS1Q99742 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
NPAS1Q99742 AC026471.1-201ENST00000564629 3026 ntBASIC17.8■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 38.7 ms