Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC25.9■■□□□ 1.74
USHBP1Q8N6Y0 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC25.89■■□□□ 1.74
USHBP1Q8N6Y0 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC25.89■■□□□ 1.74
USHBP1Q8N6Y0 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC25.89■■□□□ 1.74
USHBP1Q8N6Y0 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC25.89■■□□□ 1.74
USHBP1Q8N6Y0 AC096733.2-201ENST00000609937 1394 ntBASIC25.89■■□□□ 1.74
USHBP1Q8N6Y0 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC25.89■■□□□ 1.73
USHBP1Q8N6Y0 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC25.89■■□□□ 1.73
USHBP1Q8N6Y0 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC25.89■■□□□ 1.73
USHBP1Q8N6Y0 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC25.89■■□□□ 1.73
USHBP1Q8N6Y0 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC25.89■■□□□ 1.73
USHBP1Q8N6Y0 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
USHBP1Q8N6Y0 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC25.88■■□□□ 1.73
USHBP1Q8N6Y0 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC25.88■■□□□ 1.73
USHBP1Q8N6Y0 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC25.88■■□□□ 1.73
USHBP1Q8N6Y0 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
USHBP1Q8N6Y0 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC25.88■■□□□ 1.73
USHBP1Q8N6Y0 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC25.88■■□□□ 1.73
USHBP1Q8N6Y0 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC25.88■■□□□ 1.73
USHBP1Q8N6Y0 AC139887.4-201ENST00000607877 719 ntBASIC25.88■■□□□ 1.73
USHBP1Q8N6Y0 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC25.88■■□□□ 1.73
USHBP1Q8N6Y0 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
USHBP1Q8N6Y0 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC25.88■■□□□ 1.73
USHBP1Q8N6Y0 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC25.88■■□□□ 1.73
USHBP1Q8N6Y0 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC25.88■■□□□ 1.73
USHBP1Q8N6Y0 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
USHBP1Q8N6Y0 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC25.87■■□□□ 1.73
USHBP1Q8N6Y0 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
USHBP1Q8N6Y0 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC25.87■■□□□ 1.73
USHBP1Q8N6Y0 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC25.87■■□□□ 1.73
USHBP1Q8N6Y0 AC022616.7-201ENST00000525383 220 ntBASIC25.87■■□□□ 1.73
USHBP1Q8N6Y0 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC25.87■■□□□ 1.73
USHBP1Q8N6Y0 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC25.87■■□□□ 1.73
USHBP1Q8N6Y0 KRT8P8-201ENST00000434750 1448 ntBASIC25.87■■□□□ 1.73
USHBP1Q8N6Y0 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC25.87■■□□□ 1.73
USHBP1Q8N6Y0 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC25.87■■□□□ 1.73
USHBP1Q8N6Y0 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
USHBP1Q8N6Y0 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC25.87■■□□□ 1.73
USHBP1Q8N6Y0 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC25.87■■□□□ 1.73
USHBP1Q8N6Y0 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC25.86■■□□□ 1.73
USHBP1Q8N6Y0 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC25.86■■□□□ 1.73
USHBP1Q8N6Y0 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC25.86■■□□□ 1.73
USHBP1Q8N6Y0 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC25.86■■□□□ 1.73
USHBP1Q8N6Y0 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
USHBP1Q8N6Y0 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
USHBP1Q8N6Y0 CD70-202ENST00000423145 881 ntTSL 2 BASIC25.86■■□□□ 1.73
USHBP1Q8N6Y0 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC25.86■■□□□ 1.73
USHBP1Q8N6Y0 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC25.86■■□□□ 1.73
USHBP1Q8N6Y0 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC25.86■■□□□ 1.73
USHBP1Q8N6Y0 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC25.86■■□□□ 1.73
USHBP1Q8N6Y0 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC25.86■■□□□ 1.73
USHBP1Q8N6Y0 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
USHBP1Q8N6Y0 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC25.86■■□□□ 1.73
USHBP1Q8N6Y0 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC25.86■■□□□ 1.73
USHBP1Q8N6Y0 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
USHBP1Q8N6Y0 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC25.86■■□□□ 1.73
USHBP1Q8N6Y0 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
USHBP1Q8N6Y0 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC25.86■■□□□ 1.73
USHBP1Q8N6Y0 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC25.86■■□□□ 1.73
USHBP1Q8N6Y0 AC073314.1-201ENST00000568729 2216 ntBASIC25.86■■□□□ 1.73
USHBP1Q8N6Y0 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC25.85■■□□□ 1.73
USHBP1Q8N6Y0 AL391422.3-201ENST00000603791 2761 ntBASIC25.85■■□□□ 1.73
USHBP1Q8N6Y0 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
USHBP1Q8N6Y0 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC25.85■■□□□ 1.73
USHBP1Q8N6Y0 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC25.85■■□□□ 1.73
USHBP1Q8N6Y0 HMGA1P5-201ENST00000412453 271 ntBASIC25.85■■□□□ 1.73
USHBP1Q8N6Y0 BX664615.1-201ENST00000443558 458 ntBASIC25.85■■□□□ 1.73
USHBP1Q8N6Y0 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC25.85■■□□□ 1.73
USHBP1Q8N6Y0 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC25.85■■□□□ 1.73
USHBP1Q8N6Y0 AL138966.2-201ENST00000621997 464 ntBASIC25.85■■□□□ 1.73
USHBP1Q8N6Y0 FEM1AP1-201ENST00000431297 1995 ntBASIC25.85■■□□□ 1.73
USHBP1Q8N6Y0 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC25.85■■□□□ 1.73
USHBP1Q8N6Y0 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
USHBP1Q8N6Y0 DET1-207ENST00000564406 2315 ntTSL 2 BASIC25.85■■□□□ 1.73
USHBP1Q8N6Y0 AL137060.1-201ENST00000618151 2648 ntBASIC25.84■■□□□ 1.73
USHBP1Q8N6Y0 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC25.84■■□□□ 1.73
USHBP1Q8N6Y0 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC25.84■■□□□ 1.73
USHBP1Q8N6Y0 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC25.84■■□□□ 1.73
USHBP1Q8N6Y0 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC25.84■■□□□ 1.73
USHBP1Q8N6Y0 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
USHBP1Q8N6Y0 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC25.84■■□□□ 1.73
USHBP1Q8N6Y0 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC25.84■■□□□ 1.73
USHBP1Q8N6Y0 AC007663.1-201ENST00000438948 1240 ntBASIC25.84■■□□□ 1.73
USHBP1Q8N6Y0 AC063952.2-201ENST00000498792 1227 ntBASIC25.84■■□□□ 1.73
USHBP1Q8N6Y0 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC25.84■■□□□ 1.73
USHBP1Q8N6Y0 LTBR-211ENST00000543190 785 ntTSL 3 BASIC25.84■■□□□ 1.73
USHBP1Q8N6Y0 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC25.84■■□□□ 1.73
USHBP1Q8N6Y0 AC020907.5-201ENST00000624372 1936 ntBASIC25.84■■□□□ 1.73
USHBP1Q8N6Y0 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC25.84■■□□□ 1.73
USHBP1Q8N6Y0 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC25.83■■□□□ 1.73
USHBP1Q8N6Y0 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC25.83■■□□□ 1.73
USHBP1Q8N6Y0 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC25.83■■□□□ 1.73
USHBP1Q8N6Y0 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC25.83■■□□□ 1.73
USHBP1Q8N6Y0 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC25.83■■□□□ 1.73
USHBP1Q8N6Y0 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC25.83■■□□□ 1.73
USHBP1Q8N6Y0 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC25.83■■□□□ 1.73
USHBP1Q8N6Y0 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC25.83■■□□□ 1.73
USHBP1Q8N6Y0 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC25.83■■□□□ 1.73
USHBP1Q8N6Y0 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC25.83■■□□□ 1.73
USHBP1Q8N6Y0 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC25.83■■□□□ 1.73
Retrieved 100 of 98,524 protein–RNA pairs in 25.2 ms