Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC18.17■□□□□ 0.5
DEPDC4Q8N2C3 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
DEPDC4Q8N2C3 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC18.17■□□□□ 0.5
DEPDC4Q8N2C3 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
DEPDC4Q8N2C3 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
DEPDC4Q8N2C3 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
DEPDC4Q8N2C3 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
DEPDC4Q8N2C3 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
DEPDC4Q8N2C3 SLC29A4P1-201ENST00000398760 971 ntBASIC18.17■□□□□ 0.5
DEPDC4Q8N2C3 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
DEPDC4Q8N2C3 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC18.17■□□□□ 0.5
DEPDC4Q8N2C3 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC18.17■□□□□ 0.5
DEPDC4Q8N2C3 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC18.17■□□□□ 0.5
DEPDC4Q8N2C3 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC18.17■□□□□ 0.5
DEPDC4Q8N2C3 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
DEPDC4Q8N2C3 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC18.17■□□□□ 0.5
DEPDC4Q8N2C3 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC18.17■□□□□ 0.5
DEPDC4Q8N2C3 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
DEPDC4Q8N2C3 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
DEPDC4Q8N2C3 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
DEPDC4Q8N2C3 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC18.17■□□□□ 0.5
DEPDC4Q8N2C3 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC18.17■□□□□ 0.5
DEPDC4Q8N2C3 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC18.17■□□□□ 0.5
DEPDC4Q8N2C3 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
DEPDC4Q8N2C3 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
DEPDC4Q8N2C3 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC18.17■□□□□ 0.5
DEPDC4Q8N2C3 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
DEPDC4Q8N2C3 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC18.17■□□□□ 0.5
DEPDC4Q8N2C3 AC009237.14-201ENST00000609975 1594 ntBASIC18.17■□□□□ 0.5
DEPDC4Q8N2C3 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC18.17■□□□□ 0.5
DEPDC4Q8N2C3 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
DEPDC4Q8N2C3 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
DEPDC4Q8N2C3 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC18.16■□□□□ 0.5
DEPDC4Q8N2C3 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
DEPDC4Q8N2C3 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC18.16■□□□□ 0.5
DEPDC4Q8N2C3 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC18.16■□□□□ 0.5
DEPDC4Q8N2C3 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
DEPDC4Q8N2C3 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
DEPDC4Q8N2C3 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
DEPDC4Q8N2C3 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
DEPDC4Q8N2C3 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
DEPDC4Q8N2C3 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
DEPDC4Q8N2C3 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
DEPDC4Q8N2C3 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
DEPDC4Q8N2C3 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
DEPDC4Q8N2C3 MAP2K4P1-201ENST00000438453 1195 ntBASIC18.16■□□□□ 0.5
DEPDC4Q8N2C3 WT1-AS_3.1-201ENST00000613262 234 ntBASIC18.16■□□□□ 0.5
DEPDC4Q8N2C3 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
DEPDC4Q8N2C3 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
DEPDC4Q8N2C3 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
DEPDC4Q8N2C3 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
DEPDC4Q8N2C3 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
DEPDC4Q8N2C3 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
DEPDC4Q8N2C3 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
DEPDC4Q8N2C3 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
DEPDC4Q8N2C3 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC18.16■□□□□ 0.5
DEPDC4Q8N2C3 LINC01465-201ENST00000408887 1940 ntBASIC18.15■□□□□ 0.5
DEPDC4Q8N2C3 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
DEPDC4Q8N2C3 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
DEPDC4Q8N2C3 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
DEPDC4Q8N2C3 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC18.15■□□□□ 0.5
DEPDC4Q8N2C3 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
DEPDC4Q8N2C3 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC18.15■□□□□ 0.5
DEPDC4Q8N2C3 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC18.15■□□□□ 0.5
DEPDC4Q8N2C3 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
DEPDC4Q8N2C3 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
DEPDC4Q8N2C3 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
DEPDC4Q8N2C3 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
DEPDC4Q8N2C3 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
DEPDC4Q8N2C3 AC007322.3-201ENST00000426526 701 ntBASIC18.15■□□□□ 0.5
DEPDC4Q8N2C3 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC18.15■□□□□ 0.5
DEPDC4Q8N2C3 AC083906.2-201ENST00000511578 360 ntBASIC18.15■□□□□ 0.5
DEPDC4Q8N2C3 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC18.15■□□□□ 0.5
DEPDC4Q8N2C3 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC18.15■□□□□ 0.5
DEPDC4Q8N2C3 AC104771.1-201ENST00000603335 964 ntBASIC18.15■□□□□ 0.5
DEPDC4Q8N2C3 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
DEPDC4Q8N2C3 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
DEPDC4Q8N2C3 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC18.15■□□□□ 0.5
DEPDC4Q8N2C3 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
DEPDC4Q8N2C3 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC18.15■□□□□ 0.5
DEPDC4Q8N2C3 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC18.14■□□□□ 0.5
DEPDC4Q8N2C3 PODN-203ENST00000395871 2744 ntTSL 5 BASIC18.14■□□□□ 0.5
DEPDC4Q8N2C3 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC18.14■□□□□ 0.5
DEPDC4Q8N2C3 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
DEPDC4Q8N2C3 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC18.14■□□□□ 0.5
DEPDC4Q8N2C3 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
DEPDC4Q8N2C3 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
DEPDC4Q8N2C3 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC18.14■□□□□ 0.49
DEPDC4Q8N2C3 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
DEPDC4Q8N2C3 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
DEPDC4Q8N2C3 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC18.14■□□□□ 0.49
DEPDC4Q8N2C3 AF201337.1-201ENST00000520239 748 ntBASIC18.14■□□□□ 0.49
DEPDC4Q8N2C3 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC18.14■□□□□ 0.49
DEPDC4Q8N2C3 AC069236.1-201ENST00000604339 616 ntBASIC18.14■□□□□ 0.49
DEPDC4Q8N2C3 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC18.14■□□□□ 0.49
DEPDC4Q8N2C3 WAC-202ENST00000347934 2839 ntTSL 5 BASIC18.14■□□□□ 0.49
DEPDC4Q8N2C3 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
DEPDC4Q8N2C3 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.49
DEPDC4Q8N2C3 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC18.14■□□□□ 0.49
DEPDC4Q8N2C3 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC18.14■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 23.1 ms