Protein–RNA interactions for Protein: Q8IXQ3

C9orf40, Uncharacterized protein C9orf40, humanhuman

Predictions only

Length 194 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf40Q8IXQ3 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC18.13■□□□□ 0.49
C9orf40Q8IXQ3 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
C9orf40Q8IXQ3 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
C9orf40Q8IXQ3 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC18.12■□□□□ 0.49
C9orf40Q8IXQ3 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
C9orf40Q8IXQ3 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
C9orf40Q8IXQ3 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
C9orf40Q8IXQ3 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
C9orf40Q8IXQ3 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
C9orf40Q8IXQ3 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC18.12■□□□□ 0.49
C9orf40Q8IXQ3 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC18.12■□□□□ 0.49
C9orf40Q8IXQ3 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
C9orf40Q8IXQ3 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC18.12■□□□□ 0.49
C9orf40Q8IXQ3 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
C9orf40Q8IXQ3 AC125437.2-201ENST00000625180 2167 ntBASIC18.12■□□□□ 0.49
C9orf40Q8IXQ3 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
C9orf40Q8IXQ3 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
C9orf40Q8IXQ3 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
C9orf40Q8IXQ3 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
C9orf40Q8IXQ3 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
C9orf40Q8IXQ3 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
C9orf40Q8IXQ3 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
C9orf40Q8IXQ3 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
C9orf40Q8IXQ3 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC18.12■□□□□ 0.49
C9orf40Q8IXQ3 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
C9orf40Q8IXQ3 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC18.11■□□□□ 0.49
C9orf40Q8IXQ3 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC18.11■□□□□ 0.49
C9orf40Q8IXQ3 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
C9orf40Q8IXQ3 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
C9orf40Q8IXQ3 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC18.11■□□□□ 0.49
C9orf40Q8IXQ3 RPS2P55-201ENST00000397318 883 ntBASIC18.11■□□□□ 0.49
C9orf40Q8IXQ3 AC012618.2-201ENST00000428058 849 ntBASIC18.11■□□□□ 0.49
C9orf40Q8IXQ3 AC107956.1-201ENST00000494359 873 ntBASIC18.11■□□□□ 0.49
C9orf40Q8IXQ3 REXO2-216ENST00000544196 452 ntTSL 3 BASIC18.11■□□□□ 0.49
C9orf40Q8IXQ3 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC18.11■□□□□ 0.49
C9orf40Q8IXQ3 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC18.11■□□□□ 0.49
C9orf40Q8IXQ3 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC18.11■□□□□ 0.49
C9orf40Q8IXQ3 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
C9orf40Q8IXQ3 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
C9orf40Q8IXQ3 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC18.11■□□□□ 0.49
C9orf40Q8IXQ3 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
C9orf40Q8IXQ3 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC18.11■□□□□ 0.49
C9orf40Q8IXQ3 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
C9orf40Q8IXQ3 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
C9orf40Q8IXQ3 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
C9orf40Q8IXQ3 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
C9orf40Q8IXQ3 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC18.1■□□□□ 0.49
C9orf40Q8IXQ3 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
C9orf40Q8IXQ3 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC18.1■□□□□ 0.49
C9orf40Q8IXQ3 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
C9orf40Q8IXQ3 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
C9orf40Q8IXQ3 KRT8P8-201ENST00000434750 1448 ntBASIC18.1■□□□□ 0.49
C9orf40Q8IXQ3 AL135905.2-201ENST00000584934 1404 ntBASIC18.1■□□□□ 0.49
C9orf40Q8IXQ3 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
C9orf40Q8IXQ3 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
C9orf40Q8IXQ3 RPS2P4-201ENST00000476944 856 ntBASIC18.1■□□□□ 0.49
C9orf40Q8IXQ3 FDX2-207ENST00000494368 584 ntTSL 4 BASIC18.1■□□□□ 0.49
C9orf40Q8IXQ3 AF186192.3-201ENST00000583427 947 ntBASIC18.1■□□□□ 0.49
C9orf40Q8IXQ3 AC233702.5-201ENST00000584107 538 ntBASIC18.1■□□□□ 0.49
C9orf40Q8IXQ3 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC18.1■□□□□ 0.49
C9orf40Q8IXQ3 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC18.1■□□□□ 0.49
C9orf40Q8IXQ3 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
C9orf40Q8IXQ3 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
C9orf40Q8IXQ3 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC18.1■□□□□ 0.49
C9orf40Q8IXQ3 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC18.1■□□□□ 0.49
C9orf40Q8IXQ3 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC18.09■□□□□ 0.49
C9orf40Q8IXQ3 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
C9orf40Q8IXQ3 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC18.09■□□□□ 0.49
C9orf40Q8IXQ3 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
C9orf40Q8IXQ3 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC18.09■□□□□ 0.49
C9orf40Q8IXQ3 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
C9orf40Q8IXQ3 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
C9orf40Q8IXQ3 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
C9orf40Q8IXQ3 AFG3L1P-217ENST00000557444 2447 ntBASIC18.09■□□□□ 0.49
C9orf40Q8IXQ3 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC18.09■□□□□ 0.49
C9orf40Q8IXQ3 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC18.09■□□□□ 0.49
C9orf40Q8IXQ3 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC18.09■□□□□ 0.49
C9orf40Q8IXQ3 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC18.09■□□□□ 0.49
C9orf40Q8IXQ3 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
C9orf40Q8IXQ3 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
C9orf40Q8IXQ3 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
C9orf40Q8IXQ3 MDFI-202ENST00000373050 809 ntTSL 2 BASIC18.09■□□□□ 0.49
C9orf40Q8IXQ3 MIR718-201ENST00000390190 70 ntBASIC18.09■□□□□ 0.49
C9orf40Q8IXQ3 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC18.09■□□□□ 0.49
C9orf40Q8IXQ3 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC18.09■□□□□ 0.49
C9orf40Q8IXQ3 AL353807.1-201ENST00000427475 662 ntBASIC18.09■□□□□ 0.49
C9orf40Q8IXQ3 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC18.09■□□□□ 0.49
C9orf40Q8IXQ3 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
C9orf40Q8IXQ3 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC18.09■□□□□ 0.49
C9orf40Q8IXQ3 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC18.09■□□□□ 0.49
C9orf40Q8IXQ3 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC18.09■□□□□ 0.49
C9orf40Q8IXQ3 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
C9orf40Q8IXQ3 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
C9orf40Q8IXQ3 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
C9orf40Q8IXQ3 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
C9orf40Q8IXQ3 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
C9orf40Q8IXQ3 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
C9orf40Q8IXQ3 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
C9orf40Q8IXQ3 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
C9orf40Q8IXQ3 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 20.8 ms