Protein–RNA interactions for Protein: Q7Z407

CSMD3, CUB and sushi domain-containing protein 3, humanhuman

Predictions only

Length 3,707 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3Q7Z407 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
CSMD3Q7Z407 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
CSMD3Q7Z407 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CSMD3Q7Z407 AC004951.3-201ENST00000418645 1148 ntBASIC13.68□□□□□ -0.22
CSMD3Q7Z407 DAP-202ENST00000432074 1048 ntTSL 2 BASIC13.68□□□□□ -0.22
CSMD3Q7Z407 VENTXP5-201ENST00000523979 775 ntBASIC13.68□□□□□ -0.22
CSMD3Q7Z407 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC13.68□□□□□ -0.22
CSMD3Q7Z407 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC13.68□□□□□ -0.22
CSMD3Q7Z407 IRF5-214ENST00000613821 595 ntTSL 5 BASIC13.68□□□□□ -0.22
CSMD3Q7Z407 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC13.68□□□□□ -0.22
CSMD3Q7Z407 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CSMD3Q7Z407 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC13.68□□□□□ -0.22
CSMD3Q7Z407 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC13.68□□□□□ -0.22
CSMD3Q7Z407 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CSMD3Q7Z407 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC13.68□□□□□ -0.22
CSMD3Q7Z407 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC13.68□□□□□ -0.22
CSMD3Q7Z407 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC13.68□□□□□ -0.22
CSMD3Q7Z407 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC13.68□□□□□ -0.22
CSMD3Q7Z407 BCL10-202ENST00000620248 774 ntTSL 5 BASIC13.68□□□□□ -0.22
CSMD3Q7Z407 AC116562.4-202ENST00000641738 218 ntBASIC13.68□□□□□ -0.22
CSMD3Q7Z407 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC13.68□□□□□ -0.22
CSMD3Q7Z407 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CSMD3Q7Z407 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC13.68□□□□□ -0.22
CSMD3Q7Z407 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC13.68□□□□□ -0.22
CSMD3Q7Z407 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CSMD3Q7Z407 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CSMD3Q7Z407 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CSMD3Q7Z407 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC13.68□□□□□ -0.22
CSMD3Q7Z407 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC13.68□□□□□ -0.22
CSMD3Q7Z407 SKP2-204ENST00000508514 821 ntTSL 3 BASIC13.68□□□□□ -0.22
CSMD3Q7Z407 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC13.68□□□□□ -0.22
CSMD3Q7Z407 CYGB-204ENST00000589342 815 ntTSL 3 BASIC13.68□□□□□ -0.22
CSMD3Q7Z407 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
CSMD3Q7Z407 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC13.68□□□□□ -0.22
CSMD3Q7Z407 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
CSMD3Q7Z407 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
CSMD3Q7Z407 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC13.68□□□□□ -0.22
CSMD3Q7Z407 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CSMD3Q7Z407 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC13.67□□□□□ -0.22
CSMD3Q7Z407 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CSMD3Q7Z407 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CSMD3Q7Z407 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC13.67□□□□□ -0.22
CSMD3Q7Z407 AL845331.1-201ENST00000424978 1190 ntBASIC13.67□□□□□ -0.22
CSMD3Q7Z407 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC13.67□□□□□ -0.22
CSMD3Q7Z407 AC008481.3-201ENST00000585656 727 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
CSMD3Q7Z407 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CSMD3Q7Z407 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC13.67□□□□□ -0.22
CSMD3Q7Z407 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC13.67□□□□□ -0.22
CSMD3Q7Z407 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CSMD3Q7Z407 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
CSMD3Q7Z407 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC13.67□□□□□ -0.22
CSMD3Q7Z407 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
CSMD3Q7Z407 PARN-205ENST00000539279 1557 ntTSL 2 BASIC13.67□□□□□ -0.22
CSMD3Q7Z407 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC13.67□□□□□ -0.22
CSMD3Q7Z407 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CSMD3Q7Z407 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC13.67□□□□□ -0.22
CSMD3Q7Z407 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC13.67□□□□□ -0.22
CSMD3Q7Z407 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC13.67□□□□□ -0.22
CSMD3Q7Z407 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC13.67□□□□□ -0.22
CSMD3Q7Z407 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC13.67□□□□□ -0.22
CSMD3Q7Z407 AC141257.4-201ENST00000634557 245 ntBASIC13.67□□□□□ -0.22
CSMD3Q7Z407 AC136944.6-201ENST00000634818 245 ntBASIC13.67□□□□□ -0.22
CSMD3Q7Z407 HLA-A-209ENST00000638375 975 ntBASIC13.67□□□□□ -0.22
CSMD3Q7Z407 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC13.67□□□□□ -0.22
CSMD3Q7Z407 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CSMD3Q7Z407 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
CSMD3Q7Z407 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC13.67□□□□□ -0.22
CSMD3Q7Z407 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CSMD3Q7Z407 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC13.67□□□□□ -0.22
CSMD3Q7Z407 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC13.67□□□□□ -0.22
CSMD3Q7Z407 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CSMD3Q7Z407 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC13.67□□□□□ -0.22
CSMD3Q7Z407 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CSMD3Q7Z407 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CSMD3Q7Z407 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CSMD3Q7Z407 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
CSMD3Q7Z407 AC116351.2-201ENST00000606540 1585 ntBASIC13.67□□□□□ -0.22
CSMD3Q7Z407 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC13.67□□□□□ -0.22
CSMD3Q7Z407 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CSMD3Q7Z407 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
CSMD3Q7Z407 AP000523.1-201ENST00000398242 1049 ntBASIC13.66□□□□□ -0.22
CSMD3Q7Z407 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC13.66□□□□□ -0.22
CSMD3Q7Z407 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC13.66□□□□□ -0.22
CSMD3Q7Z407 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
CSMD3Q7Z407 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC13.66□□□□□ -0.22
CSMD3Q7Z407 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
CSMD3Q7Z407 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC13.66□□□□□ -0.22
CSMD3Q7Z407 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC13.66□□□□□ -0.22
CSMD3Q7Z407 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC13.66□□□□□ -0.22
CSMD3Q7Z407 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CSMD3Q7Z407 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC13.66□□□□□ -0.22
CSMD3Q7Z407 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CSMD3Q7Z407 C21orf2-202ENST00000339818 2233 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
CSMD3Q7Z407 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CSMD3Q7Z407 SNX5-210ENST00000481323 562 ntTSL 3 BASIC13.66□□□□□ -0.22
CSMD3Q7Z407 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
CSMD3Q7Z407 AP003041.3-201ENST00000527151 707 ntBASIC13.66□□□□□ -0.22
CSMD3Q7Z407 AC104692.2-201ENST00000603054 253 ntBASIC13.66□□□□□ -0.22
CSMD3Q7Z407 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC13.66□□□□□ -0.22
CSMD3Q7Z407 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC13.66□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 26.1 ms