Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC20.86■□□□□ 0.93
USP41Q3LFD5 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
USP41Q3LFD5 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
USP41Q3LFD5 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
USP41Q3LFD5 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC20.86■□□□□ 0.93
USP41Q3LFD5 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
USP41Q3LFD5 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
USP41Q3LFD5 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC20.86■□□□□ 0.93
USP41Q3LFD5 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
USP41Q3LFD5 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
USP41Q3LFD5 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC20.85■□□□□ 0.93
USP41Q3LFD5 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
USP41Q3LFD5 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
USP41Q3LFD5 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC20.85■□□□□ 0.93
USP41Q3LFD5 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
USP41Q3LFD5 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
USP41Q3LFD5 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
USP41Q3LFD5 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
USP41Q3LFD5 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC20.85■□□□□ 0.93
USP41Q3LFD5 CRYGFP-201ENST00000418459 633 ntBASIC20.85■□□□□ 0.93
USP41Q3LFD5 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
USP41Q3LFD5 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
USP41Q3LFD5 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC20.85■□□□□ 0.93
USP41Q3LFD5 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC20.85■□□□□ 0.93
USP41Q3LFD5 CD37-204ENST00000535669 1674 ntTSL 2 BASIC20.85■□□□□ 0.93
USP41Q3LFD5 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
USP41Q3LFD5 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
USP41Q3LFD5 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC20.85■□□□□ 0.93
USP41Q3LFD5 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
USP41Q3LFD5 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
USP41Q3LFD5 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
USP41Q3LFD5 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
USP41Q3LFD5 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
USP41Q3LFD5 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC20.84■□□□□ 0.93
USP41Q3LFD5 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
USP41Q3LFD5 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
USP41Q3LFD5 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC20.84■□□□□ 0.93
USP41Q3LFD5 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
USP41Q3LFD5 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
USP41Q3LFD5 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
USP41Q3LFD5 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC20.84■□□□□ 0.93
USP41Q3LFD5 KRT18P57-201ENST00000443599 1254 ntBASIC20.84■□□□□ 0.93
USP41Q3LFD5 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC20.84■□□□□ 0.93
USP41Q3LFD5 EGLN1P1-201ENST00000531623 762 ntBASIC20.84■□□□□ 0.93
USP41Q3LFD5 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
USP41Q3LFD5 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
USP41Q3LFD5 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC20.84■□□□□ 0.93
USP41Q3LFD5 AL590326.2-201ENST00000625139 305 ntBASIC20.84■□□□□ 0.93
USP41Q3LFD5 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
USP41Q3LFD5 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
USP41Q3LFD5 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
USP41Q3LFD5 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
USP41Q3LFD5 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC20.84■□□□□ 0.93
USP41Q3LFD5 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
USP41Q3LFD5 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC20.83■□□□□ 0.93
USP41Q3LFD5 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC20.83■□□□□ 0.93
USP41Q3LFD5 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC20.83■□□□□ 0.93
USP41Q3LFD5 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
USP41Q3LFD5 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
USP41Q3LFD5 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.93
USP41Q3LFD5 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC20.83■□□□□ 0.93
USP41Q3LFD5 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
USP41Q3LFD5 TSPY14P-201ENST00000303979 915 ntBASIC20.83■□□□□ 0.93
USP41Q3LFD5 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.93
USP41Q3LFD5 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC20.83■□□□□ 0.93
USP41Q3LFD5 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC20.83■□□□□ 0.93
USP41Q3LFD5 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC20.83■□□□□ 0.93
USP41Q3LFD5 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC20.83■□□□□ 0.93
USP41Q3LFD5 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC20.83■□□□□ 0.93
USP41Q3LFD5 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
USP41Q3LFD5 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.93
USP41Q3LFD5 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC20.83■□□□□ 0.93
USP41Q3LFD5 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
USP41Q3LFD5 AC073508.3-201ENST00000619697 1419 ntBASIC20.83■□□□□ 0.93
USP41Q3LFD5 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC20.83■□□□□ 0.92
USP41Q3LFD5 RCC2P6-201ENST00000526625 1557 ntBASIC20.83■□□□□ 0.92
USP41Q3LFD5 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC20.83■□□□□ 0.92
USP41Q3LFD5 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.92
USP41Q3LFD5 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC20.82■□□□□ 0.92
USP41Q3LFD5 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
USP41Q3LFD5 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC20.82■□□□□ 0.92
USP41Q3LFD5 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC20.82■□□□□ 0.92
USP41Q3LFD5 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC20.82■□□□□ 0.92
USP41Q3LFD5 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
USP41Q3LFD5 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC20.82■□□□□ 0.92
USP41Q3LFD5 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC20.82■□□□□ 0.92
USP41Q3LFD5 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC20.82■□□□□ 0.92
USP41Q3LFD5 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
USP41Q3LFD5 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
USP41Q3LFD5 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
USP41Q3LFD5 PRR31-201ENST00000371629 978 ntTSL 2 BASIC20.82■□□□□ 0.92
USP41Q3LFD5 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
USP41Q3LFD5 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
USP41Q3LFD5 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC20.82■□□□□ 0.92
USP41Q3LFD5 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC20.82■□□□□ 0.92
USP41Q3LFD5 KRT18P35-201ENST00000510488 1269 ntBASIC20.82■□□□□ 0.92
USP41Q3LFD5 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
USP41Q3LFD5 SLC25A1P4-201ENST00000567977 778 ntBASIC20.82■□□□□ 0.92
USP41Q3LFD5 AP000692.2-201ENST00000608391 879 ntBASIC20.82■□□□□ 0.92
USP41Q3LFD5 AC011298.2-201ENST00000617989 482 ntBASIC20.82■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 29.9 ms