Protein–RNA interactions for Protein: P57078

RIPK4, Receptor-interacting serine/threonine-protein kinase 4, humanhuman

Predictions only

Length 832 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RIPK4P57078 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC25.7■■□□□ 1.7
RIPK4P57078 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.7
RIPK4P57078 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.7
RIPK4P57078 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC25.7■■□□□ 1.7
RIPK4P57078 SNORA78-201ENST00000459373 127 ntBASIC25.7■■□□□ 1.7
RIPK4P57078 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC25.7■■□□□ 1.7
RIPK4P57078 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC25.7■■□□□ 1.7
RIPK4P57078 RPS15-203ENST00000586096 570 ntTSL 2 BASIC25.7■■□□□ 1.7
RIPK4P57078 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC25.7■■□□□ 1.7
RIPK4P57078 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC25.7■■□□□ 1.7
RIPK4P57078 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC25.7■■□□□ 1.7
RIPK4P57078 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC25.69■■□□□ 1.7
RIPK4P57078 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC25.69■■□□□ 1.7
RIPK4P57078 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
RIPK4P57078 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC25.69■■□□□ 1.7
RIPK4P57078 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC25.69■■□□□ 1.7
RIPK4P57078 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
RIPK4P57078 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC25.69■■□□□ 1.7
RIPK4P57078 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC25.69■■□□□ 1.7
RIPK4P57078 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC25.69■■□□□ 1.7
RIPK4P57078 AL353708.3-201ENST00000610272 989 ntBASIC25.69■■□□□ 1.7
RIPK4P57078 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
RIPK4P57078 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC25.69■■□□□ 1.7
RIPK4P57078 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC25.69■■□□□ 1.7
RIPK4P57078 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC25.69■■□□□ 1.7
RIPK4P57078 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
RIPK4P57078 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
RIPK4P57078 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC25.68■■□□□ 1.7
RIPK4P57078 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC25.68■■□□□ 1.7
RIPK4P57078 AL353807.1-201ENST00000427475 662 ntBASIC25.68■■□□□ 1.7
RIPK4P57078 TSPY7P-201ENST00000431358 1114 ntBASIC25.68■■□□□ 1.7
RIPK4P57078 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC25.68■■□□□ 1.7
RIPK4P57078 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC25.68■■□□□ 1.7
RIPK4P57078 AP002982.1-201ENST00000492365 877 ntBASIC25.68■■□□□ 1.7
RIPK4P57078 MIR4497-201ENST00000583208 89 ntBASIC25.68■■□□□ 1.7
RIPK4P57078 AP001412.1-201ENST00000608405 714 ntBASIC25.68■■□□□ 1.7
RIPK4P57078 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
RIPK4P57078 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC25.68■■□□□ 1.7
RIPK4P57078 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC25.68■■□□□ 1.7
RIPK4P57078 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC25.68■■□□□ 1.7
RIPK4P57078 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
RIPK4P57078 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC25.68■■□□□ 1.7
RIPK4P57078 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC25.68■■□□□ 1.7
RIPK4P57078 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
RIPK4P57078 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC25.68■■□□□ 1.7
RIPK4P57078 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC25.68■■□□□ 1.7
RIPK4P57078 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC25.67■■□□□ 1.7
RIPK4P57078 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC25.67■■□□□ 1.7
RIPK4P57078 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC25.67■■□□□ 1.7
RIPK4P57078 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC25.67■■□□□ 1.7
RIPK4P57078 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
RIPK4P57078 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC25.67■■□□□ 1.7
RIPK4P57078 KRT8P8-201ENST00000434750 1448 ntBASIC25.67■■□□□ 1.7
RIPK4P57078 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC25.67■■□□□ 1.7
RIPK4P57078 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC25.67■■□□□ 1.7
RIPK4P57078 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC25.67■■□□□ 1.7
RIPK4P57078 AC073195.1-201ENST00000607241 877 ntBASIC25.67■■□□□ 1.7
RIPK4P57078 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC25.67■■□□□ 1.7
RIPK4P57078 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
RIPK4P57078 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
RIPK4P57078 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
RIPK4P57078 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC25.67■■□□□ 1.7
RIPK4P57078 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC25.66■■□□□ 1.7
RIPK4P57078 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
RIPK4P57078 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC25.66■■□□□ 1.7
RIPK4P57078 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC25.66■■□□□ 1.7
RIPK4P57078 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
RIPK4P57078 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC25.66■■□□□ 1.7
RIPK4P57078 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC25.66■■□□□ 1.7
RIPK4P57078 NIFKP9-201ENST00000419265 221 ntBASIC25.66■■□□□ 1.7
RIPK4P57078 FAM197Y1-201ENST00000421178 764 ntBASIC25.66■■□□□ 1.7
RIPK4P57078 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
RIPK4P57078 PENK-204ENST00000518770 863 ntTSL 2 BASIC25.66■■□□□ 1.7
RIPK4P57078 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC25.66■■□□□ 1.7
RIPK4P57078 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
RIPK4P57078 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
RIPK4P57078 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
RIPK4P57078 AC125437.2-201ENST00000625180 2167 ntBASIC25.66■■□□□ 1.7
RIPK4P57078 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC25.66■■□□□ 1.7
RIPK4P57078 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC25.65■■□□□ 1.7
RIPK4P57078 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC25.65■■□□□ 1.7
RIPK4P57078 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC25.65■■□□□ 1.7
RIPK4P57078 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC25.65■■□□□ 1.7
RIPK4P57078 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC25.65■■□□□ 1.7
RIPK4P57078 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
RIPK4P57078 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC25.65■■□□□ 1.7
RIPK4P57078 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
RIPK4P57078 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC25.65■■□□□ 1.7
RIPK4P57078 GRAP-204ENST00000573099 846 ntTSL 3 BASIC25.65■■□□□ 1.7
RIPK4P57078 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC25.65■■□□□ 1.7
RIPK4P57078 CD177P1-201ENST00000606252 935 ntBASIC25.65■■□□□ 1.7
RIPK4P57078 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC25.65■■□□□ 1.7
RIPK4P57078 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC25.65■■□□□ 1.7
RIPK4P57078 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC25.65■■□□□ 1.7
RIPK4P57078 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
RIPK4P57078 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
RIPK4P57078 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
RIPK4P57078 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
RIPK4P57078 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC25.65■■□□□ 1.7
RIPK4P57078 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.7
Retrieved 100 of 98,524 protein–RNA pairs in 17.6 ms