Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC19.19■□□□□ 0.66
PKNOX1P55347 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
PKNOX1P55347 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC19.19■□□□□ 0.66
PKNOX1P55347 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
PKNOX1P55347 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC19.19■□□□□ 0.66
PKNOX1P55347 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC19.19■□□□□ 0.66
PKNOX1P55347 AC005181.1-201ENST00000604782 1256 ntBASIC19.19■□□□□ 0.66
PKNOX1P55347 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC19.19■□□□□ 0.66
PKNOX1P55347 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
PKNOX1P55347 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC19.19■□□□□ 0.66
PKNOX1P55347 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC19.19■□□□□ 0.66
PKNOX1P55347 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
PKNOX1P55347 KRT17P1-201ENST00000399211 1546 ntBASIC19.19■□□□□ 0.66
PKNOX1P55347 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
PKNOX1P55347 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
PKNOX1P55347 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
PKNOX1P55347 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
PKNOX1P55347 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
PKNOX1P55347 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
PKNOX1P55347 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
PKNOX1P55347 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC19.18■□□□□ 0.66
PKNOX1P55347 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
PKNOX1P55347 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
PKNOX1P55347 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
PKNOX1P55347 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
PKNOX1P55347 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
PKNOX1P55347 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
PKNOX1P55347 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC19.18■□□□□ 0.66
PKNOX1P55347 AC093787.1-201ENST00000450396 207 ntBASIC19.18■□□□□ 0.66
PKNOX1P55347 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
PKNOX1P55347 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
PKNOX1P55347 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC19.18■□□□□ 0.66
PKNOX1P55347 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
PKNOX1P55347 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
PKNOX1P55347 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
PKNOX1P55347 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
PKNOX1P55347 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC19.18■□□□□ 0.66
PKNOX1P55347 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC19.18■□□□□ 0.66
PKNOX1P55347 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
PKNOX1P55347 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC19.17■□□□□ 0.66
PKNOX1P55347 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC19.17■□□□□ 0.66
PKNOX1P55347 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
PKNOX1P55347 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
PKNOX1P55347 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
PKNOX1P55347 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC19.17■□□□□ 0.66
PKNOX1P55347 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
PKNOX1P55347 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
PKNOX1P55347 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
PKNOX1P55347 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
PKNOX1P55347 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
PKNOX1P55347 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
PKNOX1P55347 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
PKNOX1P55347 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
PKNOX1P55347 PTGES2-AS1-201ENST00000443493 2100 ntBASIC19.17■□□□□ 0.66
PKNOX1P55347 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
PKNOX1P55347 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC19.17■□□□□ 0.66
PKNOX1P55347 ISCU-212ENST00000547005 795 ntTSL 3 BASIC19.17■□□□□ 0.66
PKNOX1P55347 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC19.17■□□□□ 0.66
PKNOX1P55347 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC19.17■□□□□ 0.66
PKNOX1P55347 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
PKNOX1P55347 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
PKNOX1P55347 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
PKNOX1P55347 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
PKNOX1P55347 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC19.17■□□□□ 0.66
PKNOX1P55347 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
PKNOX1P55347 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
PKNOX1P55347 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
PKNOX1P55347 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
PKNOX1P55347 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
PKNOX1P55347 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
PKNOX1P55347 Z82202.1-201ENST00000623446 1880 ntBASIC19.16■□□□□ 0.66
PKNOX1P55347 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
PKNOX1P55347 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
PKNOX1P55347 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
PKNOX1P55347 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC19.16■□□□□ 0.66
PKNOX1P55347 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
PKNOX1P55347 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC19.16■□□□□ 0.66
PKNOX1P55347 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
PKNOX1P55347 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC19.16■□□□□ 0.66
PKNOX1P55347 AC133552.2-202ENST00000575694 574 ntBASIC19.16■□□□□ 0.66
PKNOX1P55347 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
PKNOX1P55347 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
PKNOX1P55347 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
PKNOX1P55347 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
PKNOX1P55347 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC19.16■□□□□ 0.66
PKNOX1P55347 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
PKNOX1P55347 AC020763.4-201ENST00000623414 4170 ntBASIC19.16■□□□□ 0.66
PKNOX1P55347 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC19.16■□□□□ 0.66
PKNOX1P55347 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
PKNOX1P55347 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
PKNOX1P55347 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC19.15■□□□□ 0.66
PKNOX1P55347 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
PKNOX1P55347 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
PKNOX1P55347 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
PKNOX1P55347 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
PKNOX1P55347 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
PKNOX1P55347 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
PKNOX1P55347 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC19.15■□□□□ 0.66
PKNOX1P55347 LSM12P1-201ENST00000411836 588 ntBASIC19.15■□□□□ 0.66
PKNOX1P55347 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC19.15■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 20.2 ms