Protein–RNA interactions for Protein: P55283

CDH4, Cadherin-4, humanhuman

Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH4P55283 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC20.07■□□□□ 0.8
CDH4P55283 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC20.07■□□□□ 0.8
CDH4P55283 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
CDH4P55283 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CDH4P55283 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC20.07■□□□□ 0.8
CDH4P55283 NME1-207ENST00000480143 964 ntTSL 2 BASIC20.07■□□□□ 0.8
CDH4P55283 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC20.07■□□□□ 0.8
CDH4P55283 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CDH4P55283 RPS15-203ENST00000586096 570 ntTSL 2 BASIC20.07■□□□□ 0.8
CDH4P55283 AC073195.1-201ENST00000607241 877 ntBASIC20.07■□□□□ 0.8
CDH4P55283 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC20.07■□□□□ 0.8
CDH4P55283 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC20.07■□□□□ 0.8
CDH4P55283 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC20.07■□□□□ 0.8
CDH4P55283 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CDH4P55283 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CDH4P55283 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
CDH4P55283 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC20.06■□□□□ 0.8
CDH4P55283 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
CDH4P55283 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CDH4P55283 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CDH4P55283 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CDH4P55283 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CDH4P55283 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC20.06■□□□□ 0.8
CDH4P55283 NIFKP9-201ENST00000419265 221 ntBASIC20.06■□□□□ 0.8
CDH4P55283 SAPCD2P4-201ENST00000424595 1171 ntBASIC20.06■□□□□ 0.8
CDH4P55283 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC20.06■□□□□ 0.8
CDH4P55283 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
CDH4P55283 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC20.06■□□□□ 0.8
CDH4P55283 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC20.06■□□□□ 0.8
CDH4P55283 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
CDH4P55283 AC113410.3-201ENST00000623366 203 ntBASIC20.06■□□□□ 0.8
CDH4P55283 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CDH4P55283 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CDH4P55283 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CDH4P55283 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
CDH4P55283 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CDH4P55283 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CDH4P55283 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
CDH4P55283 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC20.06■□□□□ 0.8
CDH4P55283 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
CDH4P55283 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CDH4P55283 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC20.05■□□□□ 0.8
CDH4P55283 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CDH4P55283 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CDH4P55283 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CDH4P55283 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CDH4P55283 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC20.05■□□□□ 0.8
CDH4P55283 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CDH4P55283 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC20.05■□□□□ 0.8
CDH4P55283 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC20.05■□□□□ 0.8
CDH4P55283 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
CDH4P55283 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CDH4P55283 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CDH4P55283 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CDH4P55283 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CDH4P55283 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC20.04■□□□□ 0.8
CDH4P55283 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
CDH4P55283 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CDH4P55283 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC20.04■□□□□ 0.8
CDH4P55283 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC20.04■□□□□ 0.8
CDH4P55283 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CDH4P55283 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
CDH4P55283 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC20.04■□□□□ 0.8
CDH4P55283 KSR1P1-201ENST00000446298 240 ntBASIC20.04■□□□□ 0.8
CDH4P55283 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CDH4P55283 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC20.04■□□□□ 0.8
CDH4P55283 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC20.04■□□□□ 0.8
CDH4P55283 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
CDH4P55283 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC20.04■□□□□ 0.8
CDH4P55283 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC20.04■□□□□ 0.8
CDH4P55283 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
CDH4P55283 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC20.04■□□□□ 0.8
CDH4P55283 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CDH4P55283 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC20.04■□□□□ 0.8
CDH4P55283 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC20.04■□□□□ 0.8
CDH4P55283 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
CDH4P55283 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CDH4P55283 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CDH4P55283 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC20.03■□□□□ 0.8
CDH4P55283 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CDH4P55283 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC20.03■□□□□ 0.8
CDH4P55283 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC20.03■□□□□ 0.8
CDH4P55283 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CDH4P55283 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC20.03■□□□□ 0.8
CDH4P55283 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
CDH4P55283 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC20.03■□□□□ 0.8
CDH4P55283 AL596275.1-201ENST00000423464 877 ntBASIC20.03■□□□□ 0.8
CDH4P55283 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC20.03■□□□□ 0.8
CDH4P55283 MIR4497-201ENST00000583208 89 ntBASIC20.03■□□□□ 0.8
CDH4P55283 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
CDH4P55283 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC20.03■□□□□ 0.8
CDH4P55283 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
CDH4P55283 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC20.03■□□□□ 0.8
CDH4P55283 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC20.03■□□□□ 0.8
CDH4P55283 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC20.03■□□□□ 0.8
CDH4P55283 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
CDH4P55283 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CDH4P55283 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CDH4P55283 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC20.02■□□□□ 0.8
CDH4P55283 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms