Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC27.25■■□□□ 1.95
MSH6P52701 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC27.25■■□□□ 1.95
MSH6P52701 EP400NL-214ENST00000641289 2402 ntBASIC27.25■■□□□ 1.95
MSH6P52701 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC27.25■■□□□ 1.95
MSH6P52701 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC27.25■■□□□ 1.95
MSH6P52701 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC27.25■■□□□ 1.95
MSH6P52701 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC27.25■■□□□ 1.95
MSH6P52701 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC27.25■■□□□ 1.95
MSH6P52701 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC27.25■■□□□ 1.95
MSH6P52701 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC27.25■■□□□ 1.95
MSH6P52701 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC27.25■■□□□ 1.95
MSH6P52701 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC27.25■■□□□ 1.95
MSH6P52701 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC27.25■■□□□ 1.95
MSH6P52701 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC27.25■■□□□ 1.95
MSH6P52701 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC27.24■■□□□ 1.95
MSH6P52701 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC27.24■■□□□ 1.95
MSH6P52701 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC27.24■■□□□ 1.95
MSH6P52701 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC27.24■■□□□ 1.95
MSH6P52701 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC27.24■■□□□ 1.95
MSH6P52701 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC27.24■■□□□ 1.95
MSH6P52701 SPDYE13P-201ENST00000445314 798 ntBASIC27.24■■□□□ 1.95
MSH6P52701 CKBP1-201ENST00000565489 1086 ntBASIC27.24■■□□□ 1.95
MSH6P52701 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC27.24■■□□□ 1.95
MSH6P52701 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC27.24■■□□□ 1.95
MSH6P52701 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC27.24■■□□□ 1.95
MSH6P52701 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC27.24■■□□□ 1.95
MSH6P52701 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC27.24■■□□□ 1.95
MSH6P52701 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC27.24■■□□□ 1.95
MSH6P52701 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC27.24■■□□□ 1.95
MSH6P52701 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC27.24■■□□□ 1.95
MSH6P52701 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC27.24■■□□□ 1.95
MSH6P52701 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC27.23■■□□□ 1.95
MSH6P52701 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC27.23■■□□□ 1.95
MSH6P52701 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC27.23■■□□□ 1.95
MSH6P52701 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC27.23■■□□□ 1.95
MSH6P52701 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC27.23■■□□□ 1.95
MSH6P52701 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC27.23■■□□□ 1.95
MSH6P52701 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC27.23■■□□□ 1.95
MSH6P52701 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC27.23■■□□□ 1.95
MSH6P52701 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC27.22■■□□□ 1.95
MSH6P52701 SPDYE15P-201ENST00000424157 909 ntBASIC27.22■■□□□ 1.95
MSH6P52701 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC27.22■■□□□ 1.95
MSH6P52701 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC27.22■■□□□ 1.95
MSH6P52701 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC27.22■■□□□ 1.95
MSH6P52701 AC092329.2-201ENST00000598402 547 ntBASIC27.22■■□□□ 1.95
MSH6P52701 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC27.22■■□□□ 1.95
MSH6P52701 GNPTAB-201ENST00000299314 5701 ntAPPRIS P1 TSL 1 (best) BASIC27.22■■□□□ 1.95
MSH6P52701 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC27.22■■□□□ 1.95
MSH6P52701 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC27.22■■□□□ 1.95
MSH6P52701 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC27.22■■□□□ 1.95
MSH6P52701 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC27.22■■□□□ 1.95
MSH6P52701 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC27.22■■□□□ 1.95
MSH6P52701 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC27.22■■□□□ 1.95
MSH6P52701 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC27.22■■□□□ 1.95
MSH6P52701 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC27.22■■□□□ 1.95
MSH6P52701 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC27.22■■□□□ 1.95
MSH6P52701 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC27.22■■□□□ 1.95
MSH6P52701 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC27.22■■□□□ 1.95
MSH6P52701 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC27.22■■□□□ 1.95
MSH6P52701 NEK4P2-201ENST00000580004 1012 ntBASIC27.22■■□□□ 1.95
MSH6P52701 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC27.21■■□□□ 1.95
MSH6P52701 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC27.21■■□□□ 1.95
MSH6P52701 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC27.21■■□□□ 1.95
MSH6P52701 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC27.21■■□□□ 1.95
MSH6P52701 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC27.21■■□□□ 1.95
MSH6P52701 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC27.21■■□□□ 1.95
MSH6P52701 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC27.21■■□□□ 1.95
MSH6P52701 AL022342.1-201ENST00000400363 863 ntBASIC27.21■■□□□ 1.95
MSH6P52701 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC27.21■■□□□ 1.95
MSH6P52701 UNC93B7-201ENST00000509439 705 ntBASIC27.21■■□□□ 1.95
MSH6P52701 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC27.21■■□□□ 1.95
MSH6P52701 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC27.21■■□□□ 1.95
MSH6P52701 NT5C-210ENST00000582160 860 ntTSL 2 BASIC27.21■■□□□ 1.95
MSH6P52701 FGF14-AS2-201ENST00000606448 1074 ntBASIC27.21■■□□□ 1.95
MSH6P52701 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC27.21■■□□□ 1.95
MSH6P52701 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC27.21■■□□□ 1.95
MSH6P52701 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC27.2■■□□□ 1.95
MSH6P52701 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC27.2■■□□□ 1.95
MSH6P52701 OSBP-201ENST00000263847 5083 ntAPPRIS P1 TSL 1 (best) BASIC27.2■■□□□ 1.95
MSH6P52701 TUB-203ENST00000534099 1759 ntTSL 2 BASIC27.2■■□□□ 1.95
MSH6P52701 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC27.2■■□□□ 1.94
MSH6P52701 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC27.2■■□□□ 1.94
MSH6P52701 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC27.2■■□□□ 1.94
MSH6P52701 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC27.2■■□□□ 1.94
MSH6P52701 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC27.2■■□□□ 1.94
MSH6P52701 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC27.2■■□□□ 1.94
MSH6P52701 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC27.2■■□□□ 1.94
MSH6P52701 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC27.2■■□□□ 1.94
MSH6P52701 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC27.2■■□□□ 1.94
MSH6P52701 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC27.2■■□□□ 1.94
MSH6P52701 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC27.2■■□□□ 1.94
MSH6P52701 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC27.19■■□□□ 1.94
MSH6P52701 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC27.19■■□□□ 1.94
MSH6P52701 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC27.19■■□□□ 1.94
MSH6P52701 GLRB-205ENST00000512619 728 ntTSL 3 BASIC27.19■■□□□ 1.94
MSH6P52701 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC27.19■■□□□ 1.94
MSH6P52701 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC27.19■■□□□ 1.94
MSH6P52701 GCSHP2-201ENST00000560971 527 ntBASIC27.19■■□□□ 1.94
MSH6P52701 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC27.19■■□□□ 1.94
MSH6P52701 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC27.19■■□□□ 1.94
Retrieved 100 of 98,524 protein–RNA pairs in 24.1 ms