Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
RFX3P48380 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
RFX3P48380 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
RFX3P48380 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC18.38■□□□□ 0.53
RFX3P48380 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC18.38■□□□□ 0.53
RFX3P48380 GOLGA2P11-201ENST00000562660 1621 ntBASIC18.38■□□□□ 0.53
RFX3P48380 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
RFX3P48380 BCL2-203ENST00000589955 5011 ntBASIC18.37■□□□□ 0.53
RFX3P48380 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC18.37■□□□□ 0.53
RFX3P48380 HTR7P1-202ENST00000624664 4411 ntBASIC18.37■□□□□ 0.53
RFX3P48380 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC18.37■□□□□ 0.53
RFX3P48380 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
RFX3P48380 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
RFX3P48380 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC18.37■□□□□ 0.53
RFX3P48380 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
RFX3P48380 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC18.37■□□□□ 0.53
RFX3P48380 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC18.37■□□□□ 0.53
RFX3P48380 HLA-B-256ENST00000639848 1089 ntBASIC18.37■□□□□ 0.53
RFX3P48380 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC18.37■□□□□ 0.53
RFX3P48380 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC18.37■□□□□ 0.53
RFX3P48380 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
RFX3P48380 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
RFX3P48380 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
RFX3P48380 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
RFX3P48380 AC124283.5-201ENST00000624661 1809 ntBASIC18.37■□□□□ 0.53
RFX3P48380 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
RFX3P48380 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
RFX3P48380 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC18.37■□□□□ 0.53
RFX3P48380 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
RFX3P48380 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
RFX3P48380 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
RFX3P48380 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC18.36■□□□□ 0.53
RFX3P48380 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
RFX3P48380 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
RFX3P48380 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
RFX3P48380 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
RFX3P48380 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
RFX3P48380 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC18.36■□□□□ 0.53
RFX3P48380 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
RFX3P48380 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC18.36■□□□□ 0.53
RFX3P48380 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC18.36■□□□□ 0.53
RFX3P48380 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
RFX3P48380 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
RFX3P48380 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC18.36■□□□□ 0.53
RFX3P48380 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC18.36■□□□□ 0.53
RFX3P48380 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC18.36■□□□□ 0.53
RFX3P48380 OR2A1-AS1-207ENST00000486094 819 ntBASIC18.36■□□□□ 0.53
RFX3P48380 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC18.36■□□□□ 0.53
RFX3P48380 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
RFX3P48380 EMC9-206ENST00000560403 872 ntTSL 2 BASIC18.36■□□□□ 0.53
RFX3P48380 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
RFX3P48380 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
RFX3P48380 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
RFX3P48380 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC18.36■□□□□ 0.53
RFX3P48380 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
RFX3P48380 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
RFX3P48380 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC18.36■□□□□ 0.53
RFX3P48380 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC18.36■□□□□ 0.53
RFX3P48380 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
RFX3P48380 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC18.35■□□□□ 0.53
RFX3P48380 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
RFX3P48380 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
RFX3P48380 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
RFX3P48380 PHGDH-210ENST00000641115 1638 ntBASIC18.35■□□□□ 0.53
RFX3P48380 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC18.35■□□□□ 0.53
RFX3P48380 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
RFX3P48380 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
RFX3P48380 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
RFX3P48380 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
RFX3P48380 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC18.35■□□□□ 0.53
RFX3P48380 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC18.35■□□□□ 0.53
RFX3P48380 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC18.35■□□□□ 0.53
RFX3P48380 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
RFX3P48380 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
RFX3P48380 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
RFX3P48380 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC18.35■□□□□ 0.53
RFX3P48380 SOX15-203ENST00000570788 1093 ntBASIC18.35■□□□□ 0.53
RFX3P48380 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
RFX3P48380 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
RFX3P48380 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
RFX3P48380 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC18.35■□□□□ 0.53
RFX3P48380 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC18.35■□□□□ 0.53
RFX3P48380 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
RFX3P48380 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
RFX3P48380 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
RFX3P48380 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
RFX3P48380 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
RFX3P48380 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
RFX3P48380 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
RFX3P48380 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC18.34■□□□□ 0.53
RFX3P48380 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
RFX3P48380 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC18.34■□□□□ 0.53
RFX3P48380 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC18.34■□□□□ 0.53
RFX3P48380 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
RFX3P48380 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC18.34■□□□□ 0.53
RFX3P48380 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
RFX3P48380 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
RFX3P48380 HES2-206ENST00000489730 730 ntTSL 2 BASIC18.34■□□□□ 0.53
RFX3P48380 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC18.34■□□□□ 0.53
RFX3P48380 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 45.6 ms