Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC19.57■□□□□ 0.72
CXCL12P48061 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CXCL12P48061 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CXCL12P48061 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
CXCL12P48061 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC19.57■□□□□ 0.72
CXCL12P48061 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
CXCL12P48061 ETFA-216ENST00000560726 942 ntTSL 3 BASIC19.57■□□□□ 0.72
CXCL12P48061 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
CXCL12P48061 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
CXCL12P48061 AL691432.3-201ENST00000621860 400 ntBASIC19.57■□□□□ 0.72
CXCL12P48061 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC19.57■□□□□ 0.72
CXCL12P48061 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
CXCL12P48061 KRT8P8-201ENST00000434750 1448 ntBASIC19.57■□□□□ 0.72
CXCL12P48061 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC19.57■□□□□ 0.72
CXCL12P48061 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
CXCL12P48061 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC19.56■□□□□ 0.72
CXCL12P48061 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CXCL12P48061 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CXCL12P48061 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CXCL12P48061 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CXCL12P48061 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CXCL12P48061 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CXCL12P48061 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CXCL12P48061 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CXCL12P48061 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
CXCL12P48061 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CXCL12P48061 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CXCL12P48061 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC19.56■□□□□ 0.72
CXCL12P48061 GLRB-205ENST00000512619 728 ntTSL 3 BASIC19.56■□□□□ 0.72
CXCL12P48061 PTK2-216ENST00000519881 863 ntTSL 3 BASIC19.56■□□□□ 0.72
CXCL12P48061 VENTXP5-201ENST00000523979 775 ntBASIC19.56■□□□□ 0.72
CXCL12P48061 AL136038.3-201ENST00000561909 1096 ntBASIC19.56■□□□□ 0.72
CXCL12P48061 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC19.56■□□□□ 0.72
CXCL12P48061 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC19.56■□□□□ 0.72
CXCL12P48061 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
CXCL12P48061 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC19.56■□□□□ 0.72
CXCL12P48061 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CXCL12P48061 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CXCL12P48061 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
CXCL12P48061 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
CXCL12P48061 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
CXCL12P48061 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CXCL12P48061 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC19.55■□□□□ 0.72
CXCL12P48061 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CXCL12P48061 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CXCL12P48061 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CXCL12P48061 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC19.55■□□□□ 0.72
CXCL12P48061 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC19.55■□□□□ 0.72
CXCL12P48061 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CXCL12P48061 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
CXCL12P48061 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
CXCL12P48061 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC19.55■□□□□ 0.72
CXCL12P48061 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
CXCL12P48061 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC19.55■□□□□ 0.72
CXCL12P48061 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC19.55■□□□□ 0.72
CXCL12P48061 AL160286.2-201ENST00000567150 934 ntBASIC19.55■□□□□ 0.72
CXCL12P48061 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CXCL12P48061 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC19.55■□□□□ 0.72
CXCL12P48061 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC19.55■□□□□ 0.72
CXCL12P48061 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
CXCL12P48061 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CXCL12P48061 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
CXCL12P48061 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC19.54■□□□□ 0.72
CXCL12P48061 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC19.54■□□□□ 0.72
CXCL12P48061 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
CXCL12P48061 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC19.54■□□□□ 0.72
CXCL12P48061 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
CXCL12P48061 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC19.54■□□□□ 0.72
CXCL12P48061 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CXCL12P48061 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
CXCL12P48061 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
CXCL12P48061 AP000523.1-201ENST00000398242 1049 ntBASIC19.54■□□□□ 0.72
CXCL12P48061 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
CXCL12P48061 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC19.54■□□□□ 0.72
CXCL12P48061 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC19.54■□□□□ 0.72
CXCL12P48061 KRT18P38-201ENST00000449496 1282 ntBASIC19.54■□□□□ 0.72
CXCL12P48061 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC19.54■□□□□ 0.72
CXCL12P48061 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC19.54■□□□□ 0.72
CXCL12P48061 CD81-212ENST00000526072 1172 ntTSL 5 BASIC19.54■□□□□ 0.72
CXCL12P48061 AP003041.3-201ENST00000527151 707 ntBASIC19.54■□□□□ 0.72
CXCL12P48061 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC19.54■□□□□ 0.72
CXCL12P48061 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC19.54■□□□□ 0.72
CXCL12P48061 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC19.54■□□□□ 0.72
CXCL12P48061 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC19.54■□□□□ 0.72
CXCL12P48061 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
CXCL12P48061 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
CXCL12P48061 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC19.53■□□□□ 0.72
CXCL12P48061 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CXCL12P48061 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC19.53■□□□□ 0.72
CXCL12P48061 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC19.53■□□□□ 0.72
CXCL12P48061 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CXCL12P48061 AC092720.2-201ENST00000602388 1665 ntBASIC19.53■□□□□ 0.72
CXCL12P48061 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
CXCL12P48061 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CXCL12P48061 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
CXCL12P48061 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC19.53■□□□□ 0.72
CXCL12P48061 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC19.53■□□□□ 0.72
CXCL12P48061 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
CXCL12P48061 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
CXCL12P48061 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC19.53■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 43.1 ms