Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC15.92■□□□□ 0.14
CDX1P47902 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC15.92■□□□□ 0.14
CDX1P47902 PGM5P4-201ENST00000421970 445 ntBASIC15.92■□□□□ 0.14
CDX1P47902 AL355472.2-201ENST00000422958 438 ntBASIC15.92■□□□□ 0.14
CDX1P47902 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
CDX1P47902 DUSP5P2-201ENST00000426873 1033 ntBASIC15.92■□□□□ 0.14
CDX1P47902 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC15.92■□□□□ 0.14
CDX1P47902 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC15.92■□□□□ 0.14
CDX1P47902 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC15.92■□□□□ 0.14
CDX1P47902 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC15.92■□□□□ 0.14
CDX1P47902 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC15.92■□□□□ 0.14
CDX1P47902 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
CDX1P47902 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC15.92■□□□□ 0.14
CDX1P47902 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
CDX1P47902 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC15.92■□□□□ 0.14
CDX1P47902 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC15.92■□□□□ 0.14
CDX1P47902 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
CDX1P47902 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC15.92■□□□□ 0.14
CDX1P47902 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC15.92■□□□□ 0.14
CDX1P47902 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC15.92■□□□□ 0.14
CDX1P47902 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
CDX1P47902 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
CDX1P47902 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
CDX1P47902 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC15.92■□□□□ 0.14
CDX1P47902 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC15.91■□□□□ 0.14
CDX1P47902 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC15.91■□□□□ 0.14
CDX1P47902 GCK-205ENST00000437084 1385 ntTSL 5 BASIC15.91■□□□□ 0.14
CDX1P47902 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC15.91■□□□□ 0.14
CDX1P47902 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
CDX1P47902 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC15.91■□□□□ 0.14
CDX1P47902 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
CDX1P47902 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
CDX1P47902 KRT17P1-201ENST00000399211 1546 ntBASIC15.91■□□□□ 0.14
CDX1P47902 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
CDX1P47902 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC15.91■□□□□ 0.14
CDX1P47902 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC15.91■□□□□ 0.14
CDX1P47902 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC15.91■□□□□ 0.14
CDX1P47902 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC15.91■□□□□ 0.14
CDX1P47902 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
CDX1P47902 BET1L-207ENST00000529614 560 ntTSL 5 BASIC15.91■□□□□ 0.14
CDX1P47902 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
CDX1P47902 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC15.91■□□□□ 0.14
CDX1P47902 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC15.91■□□□□ 0.14
CDX1P47902 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
CDX1P47902 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC15.91■□□□□ 0.14
CDX1P47902 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
CDX1P47902 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
CDX1P47902 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
CDX1P47902 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
CDX1P47902 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC15.91■□□□□ 0.14
CDX1P47902 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC15.91■□□□□ 0.14
CDX1P47902 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
CDX1P47902 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC15.9■□□□□ 0.14
CDX1P47902 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
CDX1P47902 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
CDX1P47902 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
CDX1P47902 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
CDX1P47902 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
CDX1P47902 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
CDX1P47902 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
CDX1P47902 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
CDX1P47902 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC15.9■□□□□ 0.14
CDX1P47902 HES2-205ENST00000487437 968 ntTSL 3 BASIC15.9■□□□□ 0.14
CDX1P47902 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC15.9■□□□□ 0.14
CDX1P47902 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC15.9■□□□□ 0.14
CDX1P47902 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
CDX1P47902 PALM-207ENST00000590161 2137 ntTSL 4 BASIC15.9■□□□□ 0.14
CDX1P47902 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC15.9■□□□□ 0.14
CDX1P47902 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC15.9■□□□□ 0.14
CDX1P47902 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC15.9■□□□□ 0.14
CDX1P47902 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
CDX1P47902 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC15.9■□□□□ 0.14
CDX1P47902 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC15.9■□□□□ 0.14
CDX1P47902 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC15.9■□□□□ 0.14
CDX1P47902 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
CDX1P47902 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
CDX1P47902 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
CDX1P47902 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC15.9■□□□□ 0.14
CDX1P47902 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC15.9■□□□□ 0.14
CDX1P47902 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
CDX1P47902 PCDHB18P-201ENST00000524813 2368 ntBASIC15.9■□□□□ 0.14
CDX1P47902 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC15.9■□□□□ 0.14
CDX1P47902 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC15.89■□□□□ 0.13
CDX1P47902 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC15.89■□□□□ 0.13
CDX1P47902 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
CDX1P47902 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC15.89■□□□□ 0.13
CDX1P47902 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC15.89■□□□□ 0.13
CDX1P47902 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC15.89■□□□□ 0.13
CDX1P47902 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
CDX1P47902 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC15.89■□□□□ 0.13
CDX1P47902 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
CDX1P47902 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC15.89■□□□□ 0.13
CDX1P47902 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
CDX1P47902 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC15.89■□□□□ 0.13
CDX1P47902 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC15.89■□□□□ 0.13
CDX1P47902 OR2A1-AS1-201ENST00000462305 773 ntBASIC15.89■□□□□ 0.13
CDX1P47902 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC15.89■□□□□ 0.13
CDX1P47902 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC15.89■□□□□ 0.13
CDX1P47902 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC15.89■□□□□ 0.13
CDX1P47902 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC15.89■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 39.4 ms