Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
PTPN9P43378 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC20.38■□□□□ 0.85
PTPN9P43378 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC20.38■□□□□ 0.85
PTPN9P43378 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
PTPN9P43378 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC20.38■□□□□ 0.85
PTPN9P43378 TUBB8P6-201ENST00000436895 1288 ntBASIC20.38■□□□□ 0.85
PTPN9P43378 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC20.38■□□□□ 0.85
PTPN9P43378 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
PTPN9P43378 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
PTPN9P43378 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC20.38■□□□□ 0.85
PTPN9P43378 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
PTPN9P43378 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
PTPN9P43378 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC20.38■□□□□ 0.85
PTPN9P43378 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
PTPN9P43378 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
PTPN9P43378 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
PTPN9P43378 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
PTPN9P43378 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC20.37■□□□□ 0.85
PTPN9P43378 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
PTPN9P43378 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC20.37■□□□□ 0.85
PTPN9P43378 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC20.37■□□□□ 0.85
PTPN9P43378 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
PTPN9P43378 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
PTPN9P43378 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
PTPN9P43378 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
PTPN9P43378 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
PTPN9P43378 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
PTPN9P43378 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC20.37■□□□□ 0.85
PTPN9P43378 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
PTPN9P43378 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC20.37■□□□□ 0.85
PTPN9P43378 SERF2-207ENST00000409614 582 ntTSL 2 BASIC20.37■□□□□ 0.85
PTPN9P43378 AC133681.1-201ENST00000465482 601 ntBASIC20.37■□□□□ 0.85
PTPN9P43378 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC20.37■□□□□ 0.85
PTPN9P43378 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC20.37■□□□□ 0.85
PTPN9P43378 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
PTPN9P43378 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
PTPN9P43378 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
PTPN9P43378 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC20.37■□□□□ 0.85
PTPN9P43378 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
PTPN9P43378 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
PTPN9P43378 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC20.37■□□□□ 0.85
PTPN9P43378 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC20.37■□□□□ 0.85
PTPN9P43378 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
PTPN9P43378 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC20.37■□□□□ 0.85
PTPN9P43378 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC20.37■□□□□ 0.85
PTPN9P43378 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC20.37■□□□□ 0.85
PTPN9P43378 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC20.36■□□□□ 0.85
PTPN9P43378 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
PTPN9P43378 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC20.36■□□□□ 0.85
PTPN9P43378 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC20.36■□□□□ 0.85
PTPN9P43378 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
PTPN9P43378 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
PTPN9P43378 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC20.36■□□□□ 0.85
PTPN9P43378 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
PTPN9P43378 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
PTPN9P43378 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
PTPN9P43378 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC20.36■□□□□ 0.85
PTPN9P43378 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC20.36■□□□□ 0.85
PTPN9P43378 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC20.36■□□□□ 0.85
PTPN9P43378 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
PTPN9P43378 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
PTPN9P43378 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC20.36■□□□□ 0.85
PTPN9P43378 AC239809.2-201ENST00000415381 517 ntBASIC20.36■□□□□ 0.85
PTPN9P43378 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
PTPN9P43378 LY6E-205ENST00000519611 635 ntTSL 3 BASIC20.36■□□□□ 0.85
PTPN9P43378 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC20.36■□□□□ 0.85
PTPN9P43378 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC20.36■□□□□ 0.85
PTPN9P43378 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC20.36■□□□□ 0.85
PTPN9P43378 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC20.36■□□□□ 0.85
PTPN9P43378 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC20.36■□□□□ 0.85
PTPN9P43378 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC20.36■□□□□ 0.85
PTPN9P43378 AL023875.1-201ENST00000640777 796 ntBASIC20.36■□□□□ 0.85
PTPN9P43378 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
PTPN9P43378 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
PTPN9P43378 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
PTPN9P43378 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
PTPN9P43378 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC20.36■□□□□ 0.85
PTPN9P43378 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
PTPN9P43378 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
PTPN9P43378 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
PTPN9P43378 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC20.35■□□□□ 0.85
PTPN9P43378 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
PTPN9P43378 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC20.35■□□□□ 0.85
PTPN9P43378 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC20.35■□□□□ 0.85
PTPN9P43378 TP73-202ENST00000354437 2140 ntTSL 5 BASIC20.35■□□□□ 0.85
PTPN9P43378 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
PTPN9P43378 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC20.35■□□□□ 0.85
PTPN9P43378 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC20.35■□□□□ 0.85
PTPN9P43378 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC20.35■□□□□ 0.85
PTPN9P43378 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC20.35■□□□□ 0.85
PTPN9P43378 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
PTPN9P43378 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC20.35■□□□□ 0.85
PTPN9P43378 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
PTPN9P43378 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC20.35■□□□□ 0.85
PTPN9P43378 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC20.35■□□□□ 0.85
PTPN9P43378 TSPY20P-201ENST00000450910 630 ntBASIC20.35■□□□□ 0.85
PTPN9P43378 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC20.35■□□□□ 0.85
PTPN9P43378 FAM201B-201ENST00000458407 597 ntBASIC20.35■□□□□ 0.85
PTPN9P43378 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC20.35■□□□□ 0.85
PTPN9P43378 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 70.8 ms