Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC33■■■□□ 2.87
CUX1P39880 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC33■■■□□ 2.87
CUX1P39880 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC33■■■□□ 2.87
CUX1P39880 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC33■■■□□ 2.87
CUX1P39880 DFFB-212ENST00000625756 649 ntTSL 5 BASIC33■■■□□ 2.87
CUX1P39880 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC33■■■□□ 2.87
CUX1P39880 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC33■■■□□ 2.87
CUX1P39880 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC33■■■□□ 2.87
CUX1P39880 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC32.99■■■□□ 2.87
CUX1P39880 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC32.99■■■□□ 2.87
CUX1P39880 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC32.99■■■□□ 2.87
CUX1P39880 CKBP1-201ENST00000565489 1086 ntBASIC32.99■■■□□ 2.87
CUX1P39880 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC32.99■■■□□ 2.87
CUX1P39880 CPOX-201ENST00000264193 2825 ntAPPRIS P1 TSL 1 (best) BASIC32.99■■■□□ 2.87
CUX1P39880 KRT8P45-201ENST00000414328 1447 ntBASIC32.99■■■□□ 2.87
CUX1P39880 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC32.99■■■□□ 2.87
CUX1P39880 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC32.99■■■□□ 2.87
CUX1P39880 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC32.99■■■□□ 2.87
CUX1P39880 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC32.99■■■□□ 2.87
CUX1P39880 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC32.99■■■□□ 2.87
CUX1P39880 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC32.98■■■□□ 2.87
CUX1P39880 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC32.98■■■□□ 2.87
CUX1P39880 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC32.98■■■□□ 2.87
CUX1P39880 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC32.98■■■□□ 2.87
CUX1P39880 SPDYE13P-201ENST00000445314 798 ntBASIC32.98■■■□□ 2.87
CUX1P39880 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC32.98■■■□□ 2.87
CUX1P39880 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC32.98■■■□□ 2.87
CUX1P39880 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC32.98■■■□□ 2.87
CUX1P39880 HYMAI.1-201ENST00000620949 238 ntBASIC32.98■■■□□ 2.87
CUX1P39880 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC32.98■■■□□ 2.87
CUX1P39880 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC32.98■■■□□ 2.87
CUX1P39880 LINC01465-201ENST00000408887 1940 ntBASIC32.98■■■□□ 2.87
CUX1P39880 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC32.97■■■□□ 2.87
CUX1P39880 IPPK-202ENST00000375522 882 ntTSL 3 BASIC32.97■■■□□ 2.87
CUX1P39880 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC32.97■■■□□ 2.87
CUX1P39880 TPM4P1-201ENST00000436100 807 ntBASIC32.97■■■□□ 2.87
CUX1P39880 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC32.97■■■□□ 2.87
CUX1P39880 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC32.97■■■□□ 2.87
CUX1P39880 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC32.97■■■□□ 2.87
CUX1P39880 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC32.97■■■□□ 2.87
CUX1P39880 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC32.97■■■□□ 2.87
CUX1P39880 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC32.97■■■□□ 2.87
CUX1P39880 DAP-202ENST00000432074 1048 ntTSL 2 BASIC32.97■■■□□ 2.87
CUX1P39880 AL160286.2-201ENST00000567150 934 ntBASIC32.97■■■□□ 2.87
CUX1P39880 NT5C-210ENST00000582160 860 ntTSL 2 BASIC32.97■■■□□ 2.87
CUX1P39880 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC32.96■■■□□ 2.87
CUX1P39880 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC32.96■■■□□ 2.87
CUX1P39880 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC32.96■■■□□ 2.87
CUX1P39880 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC32.96■■■□□ 2.87
CUX1P39880 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC32.96■■■□□ 2.87
CUX1P39880 AC012313.10-201ENST00000623509 926 ntBASIC32.96■■■□□ 2.87
CUX1P39880 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC32.96■■■□□ 2.87
CUX1P39880 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC32.96■■■□□ 2.87
CUX1P39880 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC32.96■■■□□ 2.87
CUX1P39880 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC32.95■■■□□ 2.87
CUX1P39880 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC32.95■■■□□ 2.87
CUX1P39880 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC32.95■■■□□ 2.87
CUX1P39880 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC32.95■■■□□ 2.87
CUX1P39880 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC32.95■■■□□ 2.87
CUX1P39880 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC32.95■■■□□ 2.87
CUX1P39880 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC32.95■■■□□ 2.87
CUX1P39880 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC32.95■■■□□ 2.86
CUX1P39880 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC32.94■■■□□ 2.86
CUX1P39880 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC32.94■■■□□ 2.86
CUX1P39880 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC32.94■■■□□ 2.86
CUX1P39880 PRSS44-201ENST00000515154 1146 ntBASIC32.94■■■□□ 2.86
CUX1P39880 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC32.94■■■□□ 2.86
CUX1P39880 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC32.94■■■□□ 2.86
CUX1P39880 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC32.94■■■□□ 2.86
CUX1P39880 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC32.94■■■□□ 2.86
CUX1P39880 SMG8-203ENST00000578922 2178 ntBASIC32.94■■■□□ 2.86
CUX1P39880 SPDYE15P-201ENST00000424157 909 ntBASIC32.93■■■□□ 2.86
CUX1P39880 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC32.93■■■□□ 2.86
CUX1P39880 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC32.93■■■□□ 2.86
CUX1P39880 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC32.93■■■□□ 2.86
CUX1P39880 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC32.93■■■□□ 2.86
CUX1P39880 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC32.93■■■□□ 2.86
CUX1P39880 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC32.93■■■□□ 2.86
CUX1P39880 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC32.93■■■□□ 2.86
CUX1P39880 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC32.93■■■□□ 2.86
CUX1P39880 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC32.93■■■□□ 2.86
CUX1P39880 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC32.93■■■□□ 2.86
CUX1P39880 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC32.93■■■□□ 2.86
CUX1P39880 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC32.93■■■□□ 2.86
CUX1P39880 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC32.92■■■□□ 2.86
CUX1P39880 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC32.92■■■□□ 2.86
CUX1P39880 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC32.92■■■□□ 2.86
CUX1P39880 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC32.92■■■□□ 2.86
CUX1P39880 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC32.92■■■□□ 2.86
CUX1P39880 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC32.92■■■□□ 2.86
CUX1P39880 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC32.92■■■□□ 2.86
CUX1P39880 AC112907.2-201ENST00000448639 330 ntBASIC32.92■■■□□ 2.86
CUX1P39880 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC32.92■■■□□ 2.86
CUX1P39880 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC32.91■■■□□ 2.86
CUX1P39880 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC32.91■■■□□ 2.86
CUX1P39880 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC32.91■■■□□ 2.86
CUX1P39880 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC32.91■■■□□ 2.86
CUX1P39880 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC32.91■■■□□ 2.86
CUX1P39880 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC32.91■■■□□ 2.86
CUX1P39880 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC32.91■■■□□ 2.86
Retrieved 100 of 98,524 protein–RNA pairs in 35.5 ms