Protein–RNA interactions for Protein: P35398

RORA, Nuclear receptor ROR-alpha, humanhuman

Predictions only

Length 523 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RORAP35398 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
RORAP35398 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
RORAP35398 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
RORAP35398 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
RORAP35398 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
RORAP35398 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
RORAP35398 AL512408.1-201ENST00000569378 2000 ntBASIC18.61■□□□□ 0.57
RORAP35398 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
RORAP35398 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC18.61■□□□□ 0.57
RORAP35398 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
RORAP35398 KRT16P1-201ENST00000399124 1418 ntBASIC18.61■□□□□ 0.57
RORAP35398 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
RORAP35398 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
RORAP35398 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC18.61■□□□□ 0.57
RORAP35398 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
RORAP35398 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC18.61■□□□□ 0.57
RORAP35398 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC18.61■□□□□ 0.57
RORAP35398 KRT18P16-201ENST00000510337 1294 ntBASIC18.61■□□□□ 0.57
RORAP35398 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
RORAP35398 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
RORAP35398 CR392000.1-201ENST00000624770 1228 ntBASIC18.61■□□□□ 0.57
RORAP35398 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC18.61■□□□□ 0.57
RORAP35398 AC133561.5-201ENST00000635547 218 ntBASIC18.61■□□□□ 0.57
RORAP35398 AC097493.4-201ENST00000641197 219 ntBASIC18.61■□□□□ 0.57
RORAP35398 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
RORAP35398 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
RORAP35398 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
RORAP35398 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
RORAP35398 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
RORAP35398 AL162377.1-201ENST00000618844 1793 ntBASIC18.6■□□□□ 0.57
RORAP35398 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC18.6■□□□□ 0.57
RORAP35398 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
RORAP35398 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
RORAP35398 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC18.6■□□□□ 0.57
RORAP35398 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
RORAP35398 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC18.6■□□□□ 0.57
RORAP35398 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC18.6■□□□□ 0.57
RORAP35398 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC18.6■□□□□ 0.57
RORAP35398 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC18.6■□□□□ 0.57
RORAP35398 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
RORAP35398 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
RORAP35398 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
RORAP35398 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
RORAP35398 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
RORAP35398 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC18.6■□□□□ 0.57
RORAP35398 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC18.6■□□□□ 0.57
RORAP35398 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
RORAP35398 RBM17P1-201ENST00000453646 1190 ntBASIC18.6■□□□□ 0.57
RORAP35398 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC18.6■□□□□ 0.57
RORAP35398 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
RORAP35398 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC18.6■□□□□ 0.57
RORAP35398 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC18.6■□□□□ 0.57
RORAP35398 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC18.6■□□□□ 0.57
RORAP35398 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
RORAP35398 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
RORAP35398 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
RORAP35398 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
RORAP35398 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC18.59■□□□□ 0.57
RORAP35398 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
RORAP35398 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC18.59■□□□□ 0.57
RORAP35398 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC18.59■□□□□ 0.57
RORAP35398 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
RORAP35398 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC18.59■□□□□ 0.57
RORAP35398 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC18.59■□□□□ 0.57
RORAP35398 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
RORAP35398 AC116562.2-201ENST00000507042 360 ntBASIC18.59■□□□□ 0.57
RORAP35398 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC18.59■□□□□ 0.57
RORAP35398 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
RORAP35398 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC18.59■□□□□ 0.57
RORAP35398 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
RORAP35398 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC18.59■□□□□ 0.57
RORAP35398 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
RORAP35398 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC18.59■□□□□ 0.57
RORAP35398 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC18.59■□□□□ 0.57
RORAP35398 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
RORAP35398 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
RORAP35398 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC18.59■□□□□ 0.57
RORAP35398 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
RORAP35398 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC18.58■□□□□ 0.57
RORAP35398 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC18.58■□□□□ 0.57
RORAP35398 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC18.58■□□□□ 0.57
RORAP35398 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC18.58■□□□□ 0.57
RORAP35398 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC18.58■□□□□ 0.57
RORAP35398 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
RORAP35398 GOLGA6L3-201ENST00000507199 1679 ntBASIC18.58■□□□□ 0.57
RORAP35398 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC18.58■□□□□ 0.56
RORAP35398 MMP23A-201ENST00000234610 1017 ntBASIC18.58■□□□□ 0.56
RORAP35398 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC18.58■□□□□ 0.56
RORAP35398 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
RORAP35398 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
RORAP35398 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC18.58■□□□□ 0.56
RORAP35398 FAM210CP-201ENST00000445714 574 ntBASIC18.58■□□□□ 0.56
RORAP35398 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC18.58■□□□□ 0.56
RORAP35398 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC18.58■□□□□ 0.56
RORAP35398 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
RORAP35398 AL445675.2-201ENST00000620291 557 ntBASIC18.58■□□□□ 0.56
RORAP35398 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC18.58■□□□□ 0.56
RORAP35398 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC18.58■□□□□ 0.56
RORAP35398 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
RORAP35398 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC18.58■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 21.3 ms