Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC19.17■□□□□ 0.66
SHMT2P34897 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC19.17■□□□□ 0.66
SHMT2P34897 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
SHMT2P34897 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC19.17■□□□□ 0.66
SHMT2P34897 KRASP1-201ENST00000407852 552 ntBASIC19.17■□□□□ 0.66
SHMT2P34897 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC19.17■□□□□ 0.66
SHMT2P34897 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC19.17■□□□□ 0.66
SHMT2P34897 AC133681.1-201ENST00000465482 601 ntBASIC19.17■□□□□ 0.66
SHMT2P34897 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC19.17■□□□□ 0.66
SHMT2P34897 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC19.17■□□□□ 0.66
SHMT2P34897 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC19.17■□□□□ 0.66
SHMT2P34897 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC19.17■□□□□ 0.66
SHMT2P34897 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC19.17■□□□□ 0.66
SHMT2P34897 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SHMT2P34897 AC124016.1-201ENST00000609552 612 ntBASIC19.17■□□□□ 0.66
SHMT2P34897 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
SHMT2P34897 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
SHMT2P34897 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SHMT2P34897 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC19.17■□□□□ 0.66
SHMT2P34897 GOLGA2P11-201ENST00000562660 1621 ntBASIC19.17■□□□□ 0.66
SHMT2P34897 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC19.17■□□□□ 0.66
SHMT2P34897 AC099778.1-201ENST00000568593 1911 ntBASIC19.17■□□□□ 0.66
SHMT2P34897 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SHMT2P34897 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC19.17■□□□□ 0.66
SHMT2P34897 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
SHMT2P34897 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
SHMT2P34897 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SHMT2P34897 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
SHMT2P34897 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SHMT2P34897 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC19.16■□□□□ 0.66
SHMT2P34897 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SHMT2P34897 AC018553.1-201ENST00000616682 1458 ntBASIC19.16■□□□□ 0.66
SHMT2P34897 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC19.16■□□□□ 0.66
SHMT2P34897 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC19.16■□□□□ 0.66
SHMT2P34897 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SHMT2P34897 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SHMT2P34897 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SHMT2P34897 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC19.16■□□□□ 0.66
SHMT2P34897 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
SHMT2P34897 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SHMT2P34897 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
SHMT2P34897 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
SHMT2P34897 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
SHMT2P34897 SERF2-207ENST00000409614 582 ntTSL 2 BASIC19.16■□□□□ 0.66
SHMT2P34897 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
SHMT2P34897 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC19.16■□□□□ 0.66
SHMT2P34897 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC19.16■□□□□ 0.66
SHMT2P34897 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC19.16■□□□□ 0.66
SHMT2P34897 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC19.16■□□□□ 0.66
SHMT2P34897 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC19.16■□□□□ 0.66
SHMT2P34897 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
SHMT2P34897 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC19.16■□□□□ 0.66
SHMT2P34897 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
SHMT2P34897 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SHMT2P34897 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
SHMT2P34897 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
SHMT2P34897 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
SHMT2P34897 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SHMT2P34897 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC19.16■□□□□ 0.66
SHMT2P34897 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SHMT2P34897 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC19.16■□□□□ 0.66
SHMT2P34897 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
SHMT2P34897 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
SHMT2P34897 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
SHMT2P34897 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC19.15■□□□□ 0.66
SHMT2P34897 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SHMT2P34897 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
SHMT2P34897 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC19.15■□□□□ 0.66
SHMT2P34897 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
SHMT2P34897 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SHMT2P34897 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC19.15■□□□□ 0.66
SHMT2P34897 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SHMT2P34897 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SHMT2P34897 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC19.15■□□□□ 0.66
SHMT2P34897 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC19.15■□□□□ 0.66
SHMT2P34897 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
SHMT2P34897 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
SHMT2P34897 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SHMT2P34897 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SHMT2P34897 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC19.15■□□□□ 0.66
SHMT2P34897 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC19.15■□□□□ 0.66
SHMT2P34897 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC19.15■□□□□ 0.66
SHMT2P34897 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC19.15■□□□□ 0.66
SHMT2P34897 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
SHMT2P34897 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
SHMT2P34897 MOK-225ENST00000522867 1883 ntTSL 5 BASIC19.15■□□□□ 0.66
SHMT2P34897 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC19.15■□□□□ 0.66
SHMT2P34897 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SHMT2P34897 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC19.15■□□□□ 0.66
SHMT2P34897 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.66
SHMT2P34897 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
SHMT2P34897 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.65
SHMT2P34897 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
SHMT2P34897 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
SHMT2P34897 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC19.14■□□□□ 0.65
SHMT2P34897 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
SHMT2P34897 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
SHMT2P34897 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
SHMT2P34897 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC19.14■□□□□ 0.65
SHMT2P34897 UBE2SP1-201ENST00000450587 669 ntBASIC19.14■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 43.8 ms