Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
MSX1P28360 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC17.96■□□□□ 0.46
MSX1P28360 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.46
MSX1P28360 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.46
MSX1P28360 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC17.96■□□□□ 0.46
MSX1P28360 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC17.95■□□□□ 0.46
MSX1P28360 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
MSX1P28360 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
MSX1P28360 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
MSX1P28360 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC17.95■□□□□ 0.46
MSX1P28360 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
MSX1P28360 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
MSX1P28360 AP006587.1-201ENST00000534129 1502 ntBASIC17.95■□□□□ 0.46
MSX1P28360 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
MSX1P28360 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC17.95■□□□□ 0.46
MSX1P28360 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC17.95■□□□□ 0.46
MSX1P28360 RPS2P55-201ENST00000397318 883 ntBASIC17.95■□□□□ 0.46
MSX1P28360 AC107956.1-201ENST00000494359 873 ntBASIC17.95■□□□□ 0.46
MSX1P28360 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC17.95■□□□□ 0.46
MSX1P28360 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC17.95■□□□□ 0.46
MSX1P28360 RPS20-210ENST00000523936 899 ntTSL 2 BASIC17.95■□□□□ 0.46
MSX1P28360 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC17.95■□□□□ 0.46
MSX1P28360 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC17.95■□□□□ 0.46
MSX1P28360 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC17.95■□□□□ 0.46
MSX1P28360 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC17.95■□□□□ 0.46
MSX1P28360 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
MSX1P28360 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
MSX1P28360 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
MSX1P28360 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
MSX1P28360 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC17.95■□□□□ 0.46
MSX1P28360 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
MSX1P28360 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
MSX1P28360 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
MSX1P28360 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC17.95■□□□□ 0.46
MSX1P28360 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
MSX1P28360 ADM-207ENST00000530439 1839 ntTSL 2 BASIC17.95■□□□□ 0.46
MSX1P28360 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC17.95■□□□□ 0.46
MSX1P28360 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
MSX1P28360 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
MSX1P28360 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC17.95■□□□□ 0.46
MSX1P28360 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
MSX1P28360 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC17.94■□□□□ 0.46
MSX1P28360 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC17.94■□□□□ 0.46
MSX1P28360 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
MSX1P28360 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
MSX1P28360 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
MSX1P28360 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC17.94■□□□□ 0.46
MSX1P28360 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC17.94■□□□□ 0.46
MSX1P28360 AC133681.1-201ENST00000465482 601 ntBASIC17.94■□□□□ 0.46
MSX1P28360 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
MSX1P28360 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC17.94■□□□□ 0.46
MSX1P28360 BX088651.1-201ENST00000540551 451 ntBASIC17.94■□□□□ 0.46
MSX1P28360 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC17.94■□□□□ 0.46
MSX1P28360 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
MSX1P28360 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
MSX1P28360 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
MSX1P28360 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC17.94■□□□□ 0.46
MSX1P28360 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC17.94■□□□□ 0.46
MSX1P28360 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
MSX1P28360 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
MSX1P28360 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC17.94■□□□□ 0.46
MSX1P28360 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC17.94■□□□□ 0.46
MSX1P28360 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC17.93■□□□□ 0.46
MSX1P28360 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
MSX1P28360 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC17.93■□□□□ 0.46
MSX1P28360 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
MSX1P28360 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
MSX1P28360 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
MSX1P28360 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
MSX1P28360 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
MSX1P28360 YBX1P10-201ENST00000444752 975 ntBASIC17.93■□□□□ 0.46
MSX1P28360 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC17.93■□□□□ 0.46
MSX1P28360 LY6E-205ENST00000519611 635 ntTSL 3 BASIC17.93■□□□□ 0.46
MSX1P28360 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC17.93■□□□□ 0.46
MSX1P28360 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC17.93■□□□□ 0.46
MSX1P28360 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC17.93■□□□□ 0.46
MSX1P28360 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC17.93■□□□□ 0.46
MSX1P28360 AC124016.1-201ENST00000609552 612 ntBASIC17.93■□□□□ 0.46
MSX1P28360 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC17.93■□□□□ 0.46
MSX1P28360 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
MSX1P28360 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
MSX1P28360 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC17.93■□□□□ 0.46
MSX1P28360 KRT17P2-201ENST00000300992 1314 ntBASIC17.93■□□□□ 0.46
MSX1P28360 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC17.93■□□□□ 0.46
MSX1P28360 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
MSX1P28360 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC17.93■□□□□ 0.46
MSX1P28360 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
MSX1P28360 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
MSX1P28360 AC112907.3-201ENST00000577781 2400 ntBASIC17.92■□□□□ 0.46
MSX1P28360 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
MSX1P28360 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
MSX1P28360 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC17.92■□□□□ 0.46
MSX1P28360 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC17.92■□□□□ 0.46
MSX1P28360 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
MSX1P28360 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC17.92■□□□□ 0.46
MSX1P28360 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC17.92■□□□□ 0.46
MSX1P28360 MIR1224-201ENST00000408193 85 ntBASIC17.92■□□□□ 0.46
MSX1P28360 SERF2-207ENST00000409614 582 ntTSL 2 BASIC17.92■□□□□ 0.46
MSX1P28360 AC239809.2-201ENST00000415381 517 ntBASIC17.92■□□□□ 0.46
MSX1P28360 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 28.7 ms